View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19573_low_14 (Length: 225)
Name: NF19573_low_14
Description: NF19573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19573_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 9164962 - 9164769
Alignment:
| Q |
15 |
gatgaagaggatgatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctt-cctttccttttacttaatgtcgatttactac |
113 |
Q |
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| T |
9164962 |
gatgaagaggatgctgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctttcctttccttttacttaatgtcgatttactac |
9164863 |
T |
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| Q |
114 |
aattgtttattgttcttctttccacttataagatgaaagataagcatagcttagtgcaaactacactccctttatgatgtgccacagatagctt |
207 |
Q |
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| T |
9164862 |
aattgtttattgttcttcgttccacttataagatgaaagatgagcatagcttagtgcaaactacactccctttatgatgtgccacagatagctt |
9164769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 9152118 - 9151946
Alignment:
| Q |
30 |
gatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgttct |
129 |
Q |
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| T |
9152118 |
gatgacgacgatgtatgggttttattccttctttctcttttcacttctccctt----tccttttacttactttctatttactataatt-tttgttgttct |
9152024 |
T |
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| Q |
130 |
tctttccacttataagatgaaagataagcatagcttagtgcaaactacactccctttatgatgtgccacagatagctt |
207 |
Q |
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| T |
9152023 |
ttgttccacttataagatgaaagataagcatagctcagtgcaaattatactccctttatggtgtgctacagatagctt |
9151946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 9179522 - 9179671
Alignment:
| Q |
27 |
gatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgt |
126 |
Q |
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| T |
9179522 |
gatgacgatgacgacgtatgagttttattccttctttctcttttcatttctccctttcttt----ttacttactttcgatttactacaatattttgttgt |
9179617 |
T |
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| Q |
127 |
tcttctttccacttataagatgaaagataagcatagcttagtgcaaactacact |
180 |
Q |
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| T |
9179618 |
tctttgttccactaataaaatgaacgataagcatagctcaatgcaaattacact |
9179671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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