View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19573_low_4 (Length: 440)
Name: NF19573_low_4
Description: NF19573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19573_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 8184155 - 8184572
Alignment:
| Q |
18 |
attagttgttgcagcttgccttccctttctcataggagcttacatcacagaggttaatctcataataaaaccacttcactaatgatttgttcattcatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8184155 |
attagttgttgcagcttgccttccctttctcataggagcttacatcacagaggttaatctcataataaaaccacttcactaatgatttgttcattcatac |
8184254 |
T |
|
| Q |
118 |
ttctatctatggtgcattattcatgtcctcaatcttcactgcataataacctatagaataactgaaagttaaaattgtttatgcagcaactatttctcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8184255 |
ttctatctatggtgcattattcatgtcctcaatcttcactgcataataacctatagaataactgaaagttaaaattgtttatgcagcaactatttctcaa |
8184354 |
T |
|
| Q |
218 |
gggatttggtggagattacagtcatgcttactccaaagcaaattctttggctcgtgatgctattgtgaacatacgtattgtcactgctttcagtgcagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8184355 |
gggatttggtggagattacagtcatgcttactccaaagcaaattctttggctcgtgatgctattgtgaacatacgtattgtcactgctttcagtgcagaa |
8184454 |
T |
|
| Q |
318 |
gatcgaatgtcaacccaattcgcatatgaactgaataaacctaacaagcaggcacttctgagaggccagatatcaggttttggttacggcttgacccaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8184455 |
gatcgaatgtcaacccaattcgcatatgaactgaataaaccttacaagcaggcacttctgagaggccagatatcaggttttggttacggcttgacccaac |
8184554 |
T |
|
| Q |
418 |
tgtttgctctctgctcct |
435 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
8184555 |
tgtttgctttctgctcct |
8184572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 49217403 - 49217488
Alignment:
| Q |
18 |
attagttgttgcagcttgccttccctttctcataggagcttacatcacagaggttaatctcataataaaaccacttcactaatgat |
103 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49217403 |
attagtggttgcagcttgccttccccttctcagaggagcttccatcacaaaggttaatctcataataaaaccacttcactaatgat |
49217488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 376
Target Start/End: Original strand, 49217562 - 49217694
Alignment:
| Q |
245 |
ttactccaaagcaaattctttggctcgt-gatgctattgtgaacatacgtattgtcactgctttcagtgcagaagatcgaatgtcaacccaattcgcata |
343 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || | ||||| |||||||||||||||||||||||| || |||||||| || | |||| | ||| |||| |
|
|
| T |
49217562 |
ttactctaaagcaacttctttggctcgttgaagttattgggaacatacgtattgtcactgcttttggtacagaagattgagtatcaattcgatttgcatc |
49217661 |
T |
|
| Q |
344 |
tgaactgaataaacctaacaagcaggcacttct |
376 |
Q |
| |
|
||| ||||||||| |||| |||||||||||||| |
|
|
| T |
49217662 |
tgagctgaataaaactaataagcaggcacttct |
49217694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University