View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_1 (Length: 863)
Name: NF19574_high_1
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 715; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 25 - 848
Target Start/End: Original strand, 1450703 - 1451533
Alignment:
| Q |
25 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1450703 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgtctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
1450802 |
T |
|
| Q |
125 |
ggtggatgatcaggttatagcctttcattagtcagtagttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
224 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1450803 |
ggtggatgatcaggttatagcctttcattagtcagtacttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
1450902 |
T |
|
| Q |
225 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatag-tttttgagtgtatggatttattgcataggataggtagatattatatcgtgtaa |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1450903 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatagttttttgagtgcatggatttattgcataggataggtagatattatatcgtgtaa |
1451002 |
T |
|
| Q |
324 |
atatggatatgatatcctgtacnnnnnnnattgattgttttaagcctatgtaagagatcttgttgtataattgagacacacagtatttgacatatgtgtc |
423 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451003 |
atatggatatgatatcctgtactttttttattgattgttttaagcctatataagagatcttgttgtataattgagacacacagtatttgacatatgtgtc |
1451102 |
T |
|
| Q |
424 |
tctcttttcttctcacaaagtaacatttgtcgagtaaattttccatagtaaatatgaccctaaagatgttgagttctgcataatgatctatggaaaatgt |
523 |
Q |
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| T |
1451103 |
tctcttttcttctcacaaagtaacatttgtcgagtaaattttccatagcaaatatgaccctaaagatgttgagttctgcataatgatctatggaaaatgt |
1451202 |
T |
|
| Q |
524 |
aaatcatgttgatgaagattatggaagggatgtaatatccaatact-----taaaaaattgacttaaacatgtgtttattccttttctgaggtttaaaat |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451203 |
aaatcatgttgatgaagattatggaagggatgtaatatccaatacttaaaataaaaaattgacttaaacatgtgtttattccttttctgaggtttaaaat |
1451302 |
T |
|
| Q |
619 |
ttaaatgcttaag-nnnnnnnnnttcttttctttttcagcattttgaagactttgttgtgagacattttatcagtcgtgctaatgatatcatggtggcat |
717 |
Q |
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| T |
1451303 |
ttaaatgcttaagaaaaaaaaaaatcttttctttttcagcattttgaagacttcgttgtgagacattttatcagtcgtgctaatgatatcatggtggcat |
1451402 |
T |
|
| Q |
718 |
gcaatgcatacatggaaggtgctaaaatgaggtgttcggttaaaggtacggttcagaagggtggcgaaagctgctcggggaagtctaagacttctttagc |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451403 |
gcaatgcatacatggaaggtgctaaaatgaggtgttcggttaaaggtacggttcaggagggtggcgaaagctgctcggggaagtctaagacttctttagc |
1451502 |
T |
|
| Q |
818 |
tagaaacatgaaagtggctgccctaaatttt |
848 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
1451503 |
tagaaacatgaaagtggctgccctaaatttt |
1451533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 649 - 735
Target Start/End: Original strand, 1006386 - 1006472
Alignment:
| Q |
649 |
tttttcagcattttgaagactttgttgtgagacattttatcagtcgtgctaatgatatcatggtggcatgcaatgcatacatggaag |
735 |
Q |
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|||||||| |||| ||||||||| |||| | ||||| |||| |||||| ||||||| ||| ||||| ||||||||||||||||| |
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| T |
1006386 |
tttttcagaatttcgaagactttattgtagggcatttcatcaaccgtgctcatgatattctggaggcatacaatgcatacatggaag |
1006472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 139 - 273
Target Start/End: Original strand, 52473849 - 52473984
Alignment:
| Q |
139 |
ttatagcctttcattagtcagt--agttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagacattttaaatgttt |
236 |
Q |
| |
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||||||| ||||||||||| || |||||| || ||| |||||||| ||| || ||||||| ||||||| || ||||||||||||| |||||| ||| |
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| T |
52473849 |
ttatagcttttcattagtctgtgcagttgacatcttgccattgactggttttctg-cataatttagttcagctgcattagacaagacaatttaaagtttt |
52473947 |
T |
|
| Q |
237 |
gattaagcattacttcttgaatttgttagtatagttt |
273 |
Q |
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| T |
52473948 |
gattaagtattacttcttgaatttgttagtatagttt |
52473984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 486 - 740
Target Start/End: Original strand, 52474374 - 52474639
Alignment:
| Q |
486 |
aagatgttgagttctgcata-atgatctatggaaaatgtaaatcat-----gttgatgaagattatggaagg-gatgtaatatccaatacttaaaaa--- |
575 |
Q |
| |
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|||||||||||||||||||| | ||||||||||| |||| |||||| || |||||||||||||||| | | |||||||| |||||||| |||| |
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| T |
52474374 |
aagatgttgagttctgcatataagatctatggaagatgtgaatcatttgatgtggatgaagattatggaaagtgctgtaatatgcaatactttaaaacaa |
52474473 |
T |
|
| Q |
576 |
-attgacttaaacatgtgtttattccttttctgaggtttaaaatttaaatgcttaagnnnnnnnnnttcttttctttttcagcattttgaagactttgtt |
674 |
Q |
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|||||||||||| |||||| |||||||||| | |||||||||||||| || || | || |||| | ||||| |||| |||| |||||| |
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| T |
52474474 |
aattgacttaaacttgtgttgattccttttccgtggtttaaaatttaactgttttaagaacttttttttttttttgcttcagaatttcaaagattttgtt |
52474573 |
T |
|
| Q |
675 |
gtgagacattttatcagtcgtgctaatgatatcatggtggcatgcaatgcatacatggaaggtgct |
740 |
Q |
| |
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||| | ||||| ||||| |||| | |||| || ||||||||| ||||||||||||| ||||||||| |
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| T |
52474574 |
gtggggcatttcatcagccgtgttcatgaaattatggtggcaggcaatgcatacattgaaggtgct |
52474639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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