View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_15 (Length: 338)
Name: NF19574_high_15
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_15 |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 46613576 - 46613261
Alignment:
| Q |
14 |
caaatgacttatatgagaggtagatttgaaagagtaattggttctaaggattctgaagctttttatatgattaatcctgataataatattaataatggtg |
113 |
Q |
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| T |
46613576 |
caaatgacttatatgagaggtagatttgaaagagtaattggttctaaggattctgaagctttttatatgattaatcctgataataatattaataatggtg |
46613477 |
T |
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| Q |
114 |
ctcaaggacctgagtttagtatcttttttgttagagctcactaggattcttgtattataatatgttaatgtgtatgtatcatcatattgaatatcattac |
213 |
Q |
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| T |
46613476 |
ctcaaggacctgagtttagtatcttttttgttagagctcactaggattcttgtattataatatgttaatgtgtatgtatcatcatattgaatatcattac |
46613377 |
T |
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| Q |
214 |
ttctaagctcgaactttttgaaaagtggcattaaatgaataaccatgtcactctctcaattcttatatagtgtttcctttcccttaattcttgtttaatt |
313 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
46613376 |
ttctaagctcgagcttttttaaaagtggcattaaatgaataaccatgtcactctctcaattcttatatagtgtttccttcaccttaattcatgtttaatt |
46613277 |
T |
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| Q |
314 |
gtagagtggcctttgt |
329 |
Q |
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| T |
46613276 |
gtagagtggcctttgt |
46613261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 1726 - 1777
Alignment:
| Q |
56 |
tctaaggattctgaagctttttatatgattaatcctgataataatattaata |
107 |
Q |
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| T |
1726 |
tctaaggattctgaagctttttataagattaatcctgataacagtattaata |
1777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 6764278 - 6764227
Alignment:
| Q |
56 |
tctaaggattctgaagctttttatatgattaatcctgataataatattaata |
107 |
Q |
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| T |
6764278 |
tctaaggattctgaagctttttataagattaatcctgataacagtattaata |
6764227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 6742504 - 6742471
Alignment:
| Q |
33 |
gtagatttgaaagagtaattggttctaaggattc |
66 |
Q |
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| T |
6742504 |
gtagatttgaaagagtagttggttctaaggattc |
6742471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 46089806 - 46089878
Alignment:
| Q |
23 |
tatatgagaggtagatttgaaagagtaattggttctaaggattctgaagctttttatatgattaatcctgata |
95 |
Q |
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| T |
46089806 |
tatatgagagctaggtttgagagaattgttggctctagagattctgaagctttctatatgatgaatcctgata |
46089878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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