View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19574_high_16 (Length: 310)

Name: NF19574_high_16
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19574_high_16
NF19574_high_16
[»] chr4 (1 HSPs)
chr4 (19-248)||(53621491-53621723)
[»] chr6 (2 HSPs)
chr6 (259-301)||(26452309-26452351)
chr6 (259-301)||(26446503-26446545)
[»] chr8 (4 HSPs)
chr8 (259-301)||(24744392-24744434)
chr8 (259-301)||(24750107-24750149)
chr8 (259-301)||(43579678-43579720)
chr8 (259-301)||(43583590-43583632)
[»] chr5 (2 HSPs)
chr5 (259-301)||(21006138-21006180)
chr5 (259-301)||(21011884-21011926)
[»] chr1 (1 HSPs)
chr1 (259-301)||(24502061-24502103)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 53621723 - 53621491
Alignment:
Q  19 gatccagatatgaaatggtgatccctttaactcggtttcttgtgcatttatttatggagaaaatatccaaaatttatatggaatgaatttgagttcttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53621723 gatccagatatgaaatggtgatccctttaactcggtttcttgtgcatttatttatggagaaaatatccaaaatttatatggaatgaatttgagttcttga 53621624  T
Q  119 ttgctacgataatgtattgctgttgtgttggataagaacgatatcacgtgtcatagtgtcggactacgacactcctgtggatattcctacgattacaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  53621623 ttgctacgataatgtattgctgttgtgttggataagaacgatatcacgtgtcatagtgtcggactacgacactcccgtggatattcctaagattacaaaa 53621524  T
Q  219 caacgttatt---ttttacaaaactaaataata 248  Q
    ||||||||||   ||||||||||||||||||||    
T  53621523 caacgttatttttttttacaaaactaaataata 53621491  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 26452351 - 26452309
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26452351 ttaatgcatacgcaggtcccttaacttattttttcttctcact 26452309  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 26446503 - 26446545
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  26446503 ttaatgcatacgcatgtcccttaacttattttttcttctcact 26446545  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 24744392 - 24744434
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  24744392 ttaatgcatacggaggtcccttaacttattttttcttctcact 24744434  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 24750149 - 24750107
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  24750149 ttaatgcatacgcaagtcccttaacttattttttcttctcact 24750107  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 43579678 - 43579720
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||    
T  43579678 ttaatacatacgcaagtctcttaacttattttttcttctcact 43579720  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 43583632 - 43583590
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||    
T  43583632 ttaatacatacgcatgtcccttaatttattttttcttctcact 43583590  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 21006138 - 21006180
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  21006138 ttaatacatacgcaggtcccttaacttattttttcttctcact 21006180  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 21011926 - 21011884
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  21011926 ttaatacatacgcaggtcccttaacttattttttcttctcact 21011884  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 24502103 - 24502061
Alignment:
Q  259 ttaatgcatacgcaggtcccttaacttattttttcttctcact 301  Q
    ||||||||| | |||||||||||| ||||||||||||||||||    
T  24502103 ttaatgcatccccaggtcccttaatttattttttcttctcact 24502061  T

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