View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_19 (Length: 306)
Name: NF19574_high_19
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 51804356 - 51804079
Alignment:
| Q |
18 |
atggagggtcagggacagtgtacaaaatcgagctgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccaga |
117 |
Q |
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| T |
51804356 |
atggagggtcagggacagtgtacaaaatcgagctgaaaaccggagatgttgtggcggttaagaggctttggagtcgaagttcgaaggattcttcgccaga |
51804257 |
T |
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| Q |
118 |
agatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagt |
217 |
Q |
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| T |
51804256 |
agatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttggaagcataagacacaagaacattgttaagttgtattgttgcttctcaagt |
51804157 |
T |
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| Q |
218 |
ttggattgtagcttgttggtttatgagtatatgccaaatggtactttgtatgattctcttcataagggttggattcat |
295 |
Q |
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| T |
51804156 |
ttggattgtagcttgttggtttatgagtatatgccaaatggtactttgtatgattctcttcacaagggttggattcat |
51804079 |
T |
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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 291
Target Start/End: Complemental strand, 36578764 - 36578580
Alignment:
| Q |
115 |
agaagatgcattatttgtggacaaggcattgaaagctgaggtggaaacacttgg-aagcataagacacaagaacattgttaagttgta---ttgttgctt |
210 |
Q |
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||||||| |||||||| ||||||||| |||| || ||||| || |||||||| ||| |||| |||||||||||| ||| || | ||||||||| |
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| T |
36578764 |
agaagataaattatttgcggacaaggcgttgagggcagaggtagagacacttgggaagtataaaacacaagaacatgtttatcttattctgttgttgctt |
36578665 |
T |
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| Q |
211 |
ctcaagtttggattgtagcttgttggttt----atgagtatatgccaaatggtactttgtatgattctcttcataagggttggat |
291 |
Q |
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| T |
36578664 |
ctcaattttggattgtagcttgttggtttgtttatgagtacatgccaaatggtactttatatgattcacttcacaagagttggat |
36578580 |
T |
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