View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_22 (Length: 270)
Name: NF19574_high_22
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 51223631 - 51223895
Alignment:
| Q |
13 |
aaaattgccatataaaatcatagtctttaaatatcatcttaaaaatcaaaatagaacttaatttcattgaactattagtttatcagtctctttaataata |
112 |
Q |
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| T |
51223631 |
aaaattgccatataaaattatagtctttaaatatcatcttaaaaatcaaaatagaacttaattttattgaactattagtttatcggtctctttaataata |
51223730 |
T |
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| Q |
113 |
tgtatt-------tagtttgttagtctatttaataatagatgagattcttattcaaagatgtgttaatatgaaatagatctttaattaggccaacaaacc |
205 |
Q |
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| T |
51223731 |
tttattagtttattagtttgttagtctatttaataatagatgagatacttattcaaagatgtgttaatatgaaatagatctttaattaggccaacaaacc |
51223830 |
T |
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| Q |
206 |
atacatatcagacattaaaaaatgctaagttcattagtggttgtttgaacaagatgagaagataa |
270 |
Q |
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| T |
51223831 |
atacatatcagacattaaaaaatgctaagttcattagtggttgtttgaacaagatgagaagataa |
51223895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 35968992 - 35969041
Alignment:
| Q |
57 |
atcaaaatagaacttaatttcattgaactattagtttatcagtctcttta |
106 |
Q |
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| T |
35968992 |
atcaaaatagaacttaatctcattgacctattagtgtgtcagtcttttta |
35969041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 30735927 - 30735879
Alignment:
| Q |
44 |
tatcatcttaaaaatcaaaatagaacttaatttcattgaactattagtt |
92 |
Q |
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| T |
30735927 |
tatcatgttaaatttcaaaatagaacttaattttattgaaatattagtt |
30735879 |
T |
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