View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_23 (Length: 252)
Name: NF19574_high_23
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14172926 - 14173161
Alignment:
| Q |
1 |
cttttgtaattcattaatagttgttacatagaattcattataacaactgttgagagctggatcagtgggaaaaagttttctcttttcnnnnnnntcacgt |
100 |
Q |
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| T |
14172926 |
cttttgtaattcattaatagttgttacatagaattcattataacaactgttgagagctggatcagtgggaaaaagttttctcttttcaaaaaaatcacgt |
14173025 |
T |
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| Q |
101 |
tgaaccgctgctgcgtcatttagaaccagctccaagatatgcagcgagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14173026 |
tgaaccgctgctgcgtcatttagaaccagctccaagatatgcagcgagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatat |
14173125 |
T |
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| Q |
201 |
tcaagcataattggatattttggctagggttgttgt |
236 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
14173126 |
tcaagcataattggatattttggccagggttgttgt |
14173161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14177462 - 14177697
Alignment:
| Q |
1 |
cttttgtaattcattaatagttgttacatagaattcattataacaactgttgagagctggatcagtgggaaaaagttttctcttttcnnnnnnntcacgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14177462 |
cttttgtaattcattaatagttgttacatagaattcattataacaactgttgagagctggatcagtgggaaaaagttttctcttttcaaaaaaatcacgt |
14177561 |
T |
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| Q |
101 |
tgaaccgctgctgcgtcatttagaaccagctccaagatatgcagcgagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatat |
200 |
Q |
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| T |
14177562 |
tgaaccgctgctgcgtcatttagaaccagctccaagatatgcagcgagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatat |
14177661 |
T |
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| Q |
201 |
tcaagcataattggatattttggctagggttgttgt |
236 |
Q |
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| T |
14177662 |
tcaagcataattggatattttggccagggttgttgt |
14177697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 14214423 - 14214649
Alignment:
| Q |
7 |
taattcattaatagttgttacatagaattcattataacaactgttgagagctggatcagtgggaaaaagttttctcttttcnnnnnnntcacgttgaacc |
106 |
Q |
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| T |
14214423 |
taattcattaataattgtttcatagaattcattgacacaactgttaagagctggatcagtaggaaaaagttttctcttttcaaaataatcaagttgaacc |
14214522 |
T |
|
| Q |
107 |
gctgctgcgtcatttagaaccagctccaagatatgcagcgagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaagc |
206 |
Q |
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| T |
14214523 |
gctgccgcgttatttagaaccatatacaagatatgctcggaaaggtcgtggtaatttgtcgcagaggtgatttttgggtcagttttcaaaattttcaagc |
14214622 |
T |
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| Q |
207 |
ataattggatattttggctagggttgt |
233 |
Q |
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|||||| ||||||| ||||||||||| |
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| T |
14214623 |
ataatttgatatttatgctagggttgt |
14214649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 14166224 - 14166330
Alignment:
| Q |
130 |
ctccaagatatgcagcgagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaagcataattggatattttggctaggg |
229 |
Q |
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||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14166224 |
ctccaagatatgctgggagaggtcatggtaattcgtcgctgaggtgatttttgggtcagttttcaaaatattcaagcataattggatatttctgctaggg |
14166323 |
T |
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| Q |
230 |
ttgttgt |
236 |
Q |
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||||||| |
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| T |
14166324 |
ttgttgt |
14166330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 13559106 - 13559167
Alignment:
| Q |
146 |
gagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaagca |
207 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
13559106 |
gagaggtcatgataatttgtggctgaggtgatttttgggtcagtttttaaaagattcaagca |
13559167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 13554979 - 13555040
Alignment:
| Q |
146 |
gagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaagca |
207 |
Q |
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| T |
13554979 |
gagaggtcatgataatttgtggctgaggtgatttttgagtcagtttttaaaagattcaagca |
13555040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 13505967 - 13505912
Alignment:
| Q |
149 |
aggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaa |
204 |
Q |
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|||||||| |||||||||||| ||| ||| ||||||||||||||||||| |||||| |
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| T |
13505967 |
aggtcatgataatttgtggctaaggcgatatttgggtcagttttcaaaagattcaa |
13505912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 13528613 - 13528555
Alignment:
| Q |
146 |
gagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaatattcaa |
204 |
Q |
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||||||||||| |||||||||||| ||| ||| |||||||||||||||| || |||||| |
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| T |
13528613 |
gagaggtcatgataatttgtggctaaggggatatttgggtcagttttcataagattcaa |
13528555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 13496692 - 13496641
Alignment:
| Q |
146 |
gagaggtcatggtaatttgtggctgaggtgatttttgggtcagttttcaaaa |
197 |
Q |
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| T |
13496692 |
gagaggtcatggtaatttttggctaaggtgattcttgagtcagctttcaaaa |
13496641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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