View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19574_high_24 (Length: 249)
Name: NF19574_high_24
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12969989 - 12969749
Alignment:
| Q |
1 |
tgcatttcagtgtctttctatgtttagaatttctcataaatctaat-----aataaatatattgtggtgatttcaggcttcttataatattttgtattat |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12969989 |
tgcatttcagtgtctttctatgtttagaatttctcataaatctaatctaataataaatatattgtggtgatttcaggcttcttataatattttgtattat |
12969890 |
T |
|
| Q |
96 |
aaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaactcttgaaacttgtactgaatctggtgtttgtaccgctggtact |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12969889 |
aaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaactcttgaaacttgtactgaatctggtgtttgtaccgctggtact |
12969790 |
T |
|
| Q |
196 |
ggaattcagtatgtgttgacttatct-ctaatcttgtattt |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12969789 |
ggaattcagtatgtgttgacttatctcctaatcttgtattt |
12969749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 2343667 - 2343736
Alignment:
| Q |
82 |
atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa |
151 |
Q |
| |
|
||||||||| | || |||||| | || ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2343667 |
atattttgtgtgattaatttgttaaactatatggatcgaggagcaatagctagcaatggtgttaatggaa |
2343736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 2336256 - 2336325
Alignment:
| Q |
82 |
atattttgtattataaatttgatcaattatgtggatcgaggagctatagctagcaatggtgttaatggaa |
151 |
Q |
| |
|
||||||||| | || |||||| | || ||| |||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2336256 |
atattttgtgtgattaatttgttaaactatttggatcaaggagcaatagctagcaatggtgttaatggaa |
2336325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 36800241 - 36800204
Alignment:
| Q |
113 |
tggatcgaggagctatagctagcaatggtgttaatgga |
150 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
36800241 |
tggaccgaggagcaatagctagcaatggtgttaatgga |
36800204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University