View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_28 (Length: 218)
Name: NF19574_high_28
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 54859449 - 54859266
Alignment:
| Q |
19 |
atcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgatcagatagaataagctccttt |
118 |
Q |
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| T |
54859449 |
atcaagcttcatgtacttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgatcagatagaataagctccttt |
54859350 |
T |
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| Q |
119 |
gagccatggaaatgacgccgacccttctttgtctcctccggccagtaataccaacggacacgaacgtctcgtgaatcagctttc |
202 |
Q |
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| T |
54859349 |
gagccatggaaatgacgccgacccttctttgtctcctccggccagtaataccaacggacacgaacgtctcgtgaatcagctttc |
54859266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 54853829 - 54853725
Alignment:
| Q |
19 |
atcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgatcagatagaataagctccttt |
118 |
Q |
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| T |
54853829 |
atcaagcttagtgtagctcttgaaaccatgaacaacacactttccttcaattgtatcagcactctgaacatcaaaatgatctgacagaaaaagctctttt |
54853730 |
T |
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| Q |
119 |
gagcc |
123 |
Q |
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| T |
54853729 |
gagcc |
54853725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 38474806 - 38474728
Alignment:
| Q |
20 |
tcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgat |
98 |
Q |
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|||||||||||||||||||||||| |||| ||| ||| || ||||| ||||| ||| |||| ||||||||| |||||| |
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| T |
38474806 |
tcaagcttcatgtagttcttcaaattgtgcacaaaacacttcccttcaattgtgtcagcactatgaacatcataatgat |
38474728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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