View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19574_high_8 (Length: 420)

Name: NF19574_high_8
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19574_high_8
NF19574_high_8
[»] chr8 (4 HSPs)
chr8 (1-290)||(41967994-41968281)
chr8 (216-280)||(103236-103300)
chr8 (382-420)||(41967864-41967902)
chr8 (382-414)||(103404-103436)
[»] chr2 (24 HSPs)
chr2 (1-212)||(8574142-8574344)
chr2 (57-149)||(10351509-10351601)
chr2 (60-142)||(9287941-9288023)
chr2 (1-144)||(9068789-9068921)
chr2 (56-117)||(10371181-10371242)
chr2 (56-143)||(10347056-10347142)
chr2 (56-195)||(10340784-10340922)
chr2 (56-144)||(9061921-9062009)
chr2 (57-187)||(9273937-9274064)
chr2 (89-212)||(7116693-7116813)
chr2 (60-110)||(9295433-9295483)
chr2 (56-144)||(9315425-9315512)
chr2 (215-290)||(1812542-1812617)
chr2 (89-212)||(9326790-9326907)
chr2 (88-134)||(8580361-8580407)
chr2 (1-43)||(9326723-9326765)
chr2 (96-143)||(9272058-9272105)
chr2 (8-43)||(9285028-9285063)
chr2 (1-38)||(7116882-7116919)
chr2 (92-136)||(9318950-9318992)
chr2 (11-43)||(9291274-9291306)
chr2 (56-116)||(9291313-9291372)
chr2 (8-36)||(10335034-10335062)
chr2 (56-100)||(10335076-10335120)
[»] scaffold0667 (1 HSPs)
scaffold0667 (56-202)||(1907-2051)
[»] chr4 (3 HSPs)
chr4 (8-143)||(26574269-26574397)
chr4 (216-288)||(38184454-38184526)
chr4 (155-211)||(26574419-26574475)
[»] chr5 (3 HSPs)
chr5 (214-290)||(19820917-19820993)
chr5 (244-276)||(9232526-9232558)
chr5 (382-414)||(22393145-22393177)
[»] chr3 (6 HSPs)
chr3 (214-288)||(24084245-24084319)
chr3 (212-280)||(44561281-44561349)
chr3 (246-290)||(32108478-32108522)
chr3 (1-142)||(37461706-37461849)
chr3 (382-420)||(54226526-54226564)
chr3 (214-274)||(31257603-31257663)
[»] chr1 (3 HSPs)
chr1 (216-290)||(30458853-30458927)
chr1 (216-272)||(17573468-17573524)
chr1 (1-39)||(29444187-29444225)
[»] chr6 (1 HSPs)
chr6 (216-290)||(7938470-7938544)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 41968281 - 41967994
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatagttgatnnnnnnnnnnnnccatgcttttgaaaggaactatgcataaattaggagtaatttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||            |||||||| ||||||||||||||||||||||||||||||||||||    
T  41968281 ctcattgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaaaaa--ccatgcttctgaaaggaactatgcataaattaggagtaatttcat 41968184  T
Q  101 ggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatggtggaatggtctcaacactcagaaataagcttgtaaaaatgatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968183 ggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatggtggaatggtctcaacactcagaaataagcttgtaaaaatgatta 41968084  T
Q  201 ttcagtagtgaatatcatggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacatga 290  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  41968083 ttcagtagtgaatatcatggtagtcaaattgggatatgcaatgtgtatcgtttgaccaattttttgaatcgtgtatcgtaagatacatga 41967994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 103236 - 103300
Alignment:
Q  216 catggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgta 280  Q
    ||||| |||||||| |||||| | | |||||||||||||||||  ||||||||||||||||||||    
T  103236 catggcagtcaaatcgggatacgtatcgtgtatcgttcgaccatctttttgaatcgtgtatcgta 103300  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 41967902 - 41967864
Alignment:
Q  382 aactcaagtcataaacaaaggtaaataacataaggcatc 420  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  41967902 aactcaagtcataaacaaagataaataacataaggcatc 41967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 103404 - 103436
Alignment:
Q  382 aactcaagtcataaacaaaggtaaataacataa 414  Q
    ||||||||||||||||||| |||||||||||||    
T  103404 aactcaagtcataaacaaaagtaaataacataa 103436  T

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Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 8574344 - 8574142
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatagttgatnnnnnnnnnnnnccatgcttttgaaaggaactatgcataaattaggagtaatttcat 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||            || |||||||||| |||||||||||||||||  ||||||||||||    
T  8574344 ctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaa------ccgtgcttttgaatggaactatgcataaatttagagtaatttcat 8574251  T
Q  101 ggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatggtggaatggtctcaacactcagaaataagcttgtaaaaatgatta 200  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||   ||  |||||||| || ||||||||| ||| |||| ||||||| ||||| ||||    
T  8574250 ggtaggccaatttctatataacaattttctcctctttacatacc---atggcatggtggtatagtctcaacattcataaattagcttgtcaaaataatta 8574154  T
Q  201 ttcagtagtgaa 212  Q
    ||||| ||||||    
T  8574153 ttcaggagtgaa 8574142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 10351509 - 10351601
Alignment:
Q  57 catgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacccaaat 149  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  10351509 catgcttttgaaaggaactatgcataaatttggagtactttcatggtaggccaaaatctaaacaacaactttcctctctttacatacacaaat 10351601  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 9287941 - 9288023
Alignment:
Q  60 gcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacata 142  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||||||||||||||    
T  9287941 gcttttgcaaggaactatgcataaatttggagtaatttcatggtaggccaatttttcagcaactactttcttctctttacata 9288023  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 9068921 - 9068789
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatagttgatnnnnnnnnnnnnccatgcttttgaaaggaactatgcataaattaggagtaatttcat 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||            |||| ||||||||||||| ||||||||  || |||||||||||||    
T  9068921 ctcatcgaagtaagttcaacaatttcacaaaagaatagttgataaaaag------ccatacttttgaaaggaattatgcata--tttggagtaatttcat 9068830  T
Q  101 ggtaggccaatttctaaacaacaactttcttctctttacatacc 144  Q
    ||||||||||||||||||   |||||||||||||||||||||||    
T  9068829 ggtaggccaatttctaaa---caactttcttctctttacatacc 9068789  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 10371181 - 10371242
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaa 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10371181 ccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttctaa 10371242  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 10347056 - 10347142
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatac 143  Q
    ||||| ||||||||||||||||||||||||| |||||||||||   ||| |||||||||||||||||||||||| |||||||||||||    
T  10347056 ccatgtttttgaaaggaactatgcataaatttggagtaatttcccagta-gccaatttctaaacaacaactttcctctctttacatac 10347142  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 10340784 - 10340922
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatac---ccaaatttc 152  Q
    |||||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||  |||||||| | ||||||||||||| ||   ||  ||  |    
T  10340784 ccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc--aacaacaaatatcttctctttacagacaagcc--atgac 10340879  T
Q  153 atggtggaatggtctcaacactcagaaataagcttgtaaaaat 195  Q
    | |||| ||| ||||||||| |||||||||||||||| |||||    
T  10340880 agggtgtaatagtctcaacattcagaaataagcttgtcaaaat 10340922  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 9062009 - 9061921
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacc 144  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||||||| |||||| ||| ||||| || || | |||||||||||    
T  9062009 ccatgcttttgaatgaaactatgcataaatttggagtaatttcatggtaggctaatttccaaataacaatttactacactttacatacc 9061921  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 9273937 - 9274064
Alignment:
Q  57 catgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatgg 156  Q
    ||||||||||||||||||||||| ||||||   | ||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||   |   || ||    
T  9273937 catgcttttgaaaggaactatgcttaaatttaaaataatttcattgtaggccaatttctaaataacaattttctcctcttcacatacc---acgacaggg 9274033  T
Q  157 tggaatggtctcaacactcagaaataagctt 187  Q
    |||||| |||| |||| ||||||||||||||    
T  9274034 tggaatagtcttaacattcagaaataagctt 9274064  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 7116813 - 7116693
Alignment:
Q  89 gagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatggtggaatggtctcaacactcagaaataagcttg 188  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||   |   || |||| ||| ||||||||| |||||||| ||||||    
T  7116813 gagtaatttcatggtaggccaatttctcaacaacagctttcttcactttacatacc---acggcagggtgaaatagtctcaacattcagaaatgagcttg 7116717  T
Q  189 taaaaatgattattcagtagtgaa 212  Q
      ||||| |||||| || ||||||    
T  7116716 ccaaaataattatttaggagtgaa 7116693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 9295483 - 9295433
Alignment:
Q  60 gcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaa 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  9295483 gcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 9295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 9315425 - 9315512
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacc 144  Q
    ||||||||||||| ||||||||| ||||||| | |||||| | || ||||||||||||||||| ||||| ||||| | |||||||||||    
T  9315425 ccatgcttttgaatggaactatgaataaatttgtagtaatat-atagtaggccaatttctaaataacaattttctccactttacatacc 9315512  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 1812542 - 1812617
Alignment:
Q  215 tcatggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacatga 290  Q
    ||||||||||||||| |||| | | | ||||||| ||| ||||| |||| ||||||||||||||||||||||||||    
T  1812542 tcatggtagtcaaatcgggaaacgtatcgtgtattgtttgaccacttttatgaatcgtgtatcgtaagatacatga 1812617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 9326790 - 9326907
Alignment:
Q  89 gagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatggtggaatggtctcaacactcagaaataagcttg 188  Q
    |||||||||||| ||||||||||||||   ||||||||||||||||||||||||||   |   ||  ||||||| ||||||||| ||||||||||| | |    
T  9326790 gagtaatttcatagtaggccaatttct---caacaactttcttctctttacatacc---acggcagtgtggaatagtctcaacattcagaaataagttgg 9326883  T
Q  189 taaaaatgattattcagtagtgaa 212  Q
    ||||||  |||||| || ||||||    
T  9326884 taaaaaaaattatttaggagtgaa 9326907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 8580407 - 8580361
Alignment:
Q  88 ggagtaatttcatggtaggccaatttctaaacaacaactttcttctc 134  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||    
T  8580407 ggagtaatttcatggtaggcaaatttctaaacaacaattttcttctc 8580361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9326723 - 9326765
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatagttgat 43  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  9326723 ctcatcgaagtaagttcaacaatatcacaaaagaatagttgat 9326765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 9272058 - 9272105
Alignment:
Q  96 ttcatggtaggccaatttctaaacaacaactttcttctctttacatac 143  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  9272058 ttcatggtaggccaattttcaaacaactactttcttctctttacatac 9272105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 9285063 - 9285028
Alignment:
Q  8 aagtaagttcaacaatatcacaaaagaatagttgat 43  Q
    |||||||||||||||||| |||||||||||||||||    
T  9285063 aagtaagttcaacaatattacaaaagaatagttgat 9285028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7116919 - 7116882
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatag 38  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  7116919 ctcatcgaagtaagttcaacaatgtcacaaaagaatag 7116882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 9318950 - 9318992
Alignment:
Q  92 taatttcatggtaggccaatttctaaacaacaactttcttctctt 136  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||    
T  9318950 taatttcatggtaggccaatttctcaaca--aactttcttctctt 9318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 9291274 - 9291306
Alignment:
Q  11 taagttcaacaatatcacaaaagaatagttgat 43  Q
    |||||||||||||||| ||||||||||||||||    
T  9291274 taagttcaacaatatcgcaaaagaatagttgat 9291306  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 9291313 - 9291372
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggccaatttcta 116  Q
    ||||||||||||| | ||||||||||||||| | |||||| | |||| |||||||||||||    
T  9291313 ccatgcttttgaatgtaactatgcataaatttgaagtaatat-atggcaggccaatttcta 9291372  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 10335034 - 10335062
Alignment:
Q  8 aagtaagttcaacaatatcacaaaagaat 36  Q
    |||||||||||||||||||||||||||||    
T  10335034 aagtaagttcaacaatatcacaaaagaat 10335062  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 10335076 - 10335120
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaattaggagtaatttcat 100  Q
    ||||| ||||||||||||||||| | ||||| |||||||||||||    
T  10335076 ccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 10335120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 1907 - 2051
Alignment:
Q  56 ccatgcttttgaaaggaactatgcataaa-ttaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcat 154  Q
    |||||||||||||| |||||||||| ||  ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||   | |   ||     
T  1907 ccatgcttttgaaatgaactatgcaaaagcttaagagtaatttcatggtaggccaatttctcaacaacaactttcttttctttacata---acacggcag 2003  T
Q  155 ggtggaatggtctcaacactcagaaataagcttgtaaaaatgattatt 202  Q
    |||||||| ||||||||| ||||||||||||| || ||||| ||||||    
T  2004 ggtggaatagtctcaacattcagaaataagctggtcaaaataattatt 2051  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 26574269 - 26574397
Alignment:
Q  8 aagtaagttcaacaatatcacaaaagaatagttgatnnnnnnnnnnnnccatgcttttgaaaggaactatgcataaattaggagtaatttcatggtaggc 107  Q
    |||||||||||| |||||||||||||||||||||||            |||||||||| |||||||||||||||||| | ||||||| ||||||||  ||    
T  26574269 aagtaagttcaaaaatatcacaaaagaatagttgataaaag-------ccatgctttttaaaggaactatgcataaaattggagtaagttcatggtgcgc 26574361  T
Q  108 caatttctaaacaacaactttcttctctttacatac 143  Q
    |||| | ||||| |||||||||||||||||||||||    
T  26574362 caatatgtaaacgacaactttcttctctttacatac 26574397  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 38184454 - 38184526
Alignment:
Q  216 catggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacat 288  Q
    |||||||||||||| |||||| | | ||||||||||| || || || ||| |||||||||| |||||||||||    
T  38184454 catggtagtcaaatcgggatacgtatcgtgtatcgtttgatcacttcttttaatcgtgtattgtaagatacat 38184526  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 26574419 - 26574475
Alignment:
Q  155 ggtggaatggtctcaacactcagaaataagcttgtaaaaatgattattcagtagtga 211  Q
    |||||||| ||||||||| |||||||||||| ||| ||||| | |||| ||||||||    
T  26574419 ggtggaatagtctcaacattcagaaataagcatgtcaaaataactatttagtagtga 26574475  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 19820917 - 19820993
Alignment:
Q  214 atcatggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacatga 290  Q
    |||||||||||||||| |||||| | |  |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19820917 atcatggtagtcaaatcgggatacgtattgtgtatcgttcgaccacttttttggatcgtgtatcgtaagatacatga 19820993  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 9232526 - 9232558
Alignment:
Q  244 tgtatcgttcgaccaattttttgaatcgtgtat 276  Q
    ||||||||||||||| |||||||||||||||||    
T  9232526 tgtatcgttcgaccacttttttgaatcgtgtat 9232558  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 22393145 - 22393177
Alignment:
Q  382 aactcaagtcataaacaaaggtaaataacataa 414  Q
    ||||||||||||||||||| |||||||||||||    
T  22393145 aactcaagtcataaacaaaagtaaataacataa 22393177  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 24084245 - 24084319
Alignment:
Q  214 atcatggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacat 288  Q
    |||||||||||||||| |||||||| |  ||||||| |||||||| |||||||||||||||| ||||||||||||    
T  24084245 atcatggtagtcaaatcgggatatgtattgtgtatcattcgaccacttttttgaatcgtgtaccgtaagatacat 24084319  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 44561349 - 44561281
Alignment:
Q  212 atatcatggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgta 280  Q
    ||||||||||| |||||| | |||| | | ||||||||||||||||| |||||||||||||||||||||    
T  44561349 atatcatggtaatcaaatcgtgatacgtatcgtgtatcgttcgaccacttttttgaatcgtgtatcgta 44561281  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 32108522 - 32108478
Alignment:
Q  246 tatcgttcgaccaattttttgaatcgtgtatcgtaagatacatga 290  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||    
T  32108522 tatcgttcaaccacttttttgaatcgtgtatcgtaagatgcatga 32108478  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37461706 - 37461849
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatagttgatnnnnnnnnnnnnccatgcttttgaaaggaactatgc--ataaattaggagtaatttc 98  Q
    |||||| |||||||||||||||||||| |||||||| ||||||            ||||| | |||||||| |||||||  ||||||| | |||||| ||    
T  37461706 ctcatttaagtaagttcaacaatatcaaaaaagaatggttgat-----aaaaaaaccatgttcttgaaaggtactatgcatataaatttgaagtaatatc 37461800  T
Q  99 atggtaggccaatttctaaaca-----acaactttcttctctttacata 142  Q
    ||||||||||| ||||||||||     || |||||||||||||||||||    
T  37461801 atggtaggccattttctaaacaaatggactactttcttctctttacata 37461849  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 54226526 - 54226564
Alignment:
Q  382 aactcaagtcataaacaaaggtaaataacataaggcatc 420  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  54226526 aactcaagtcataaacaaaagtaaataacataaagcatc 54226564  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 31257663 - 31257603
Alignment:
Q  214 atcatggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgt 274  Q
    |||| |||||||||||||||| | | | ||||||||||| ||||  |||||||||||||||    
T  31257663 atcacggtagtcaaattgggagacgtatcgtgtatcgtttgaccgcttttttgaatcgtgt 31257603  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 30458853 - 30458927
Alignment:
Q  216 catggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacatga 290  Q
    ||||||| ||||||||||||| | | ||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  30458853 catggtaatcaaattgggatacgtatcgtgtatcgtttgaccacttttttgaatcgtgtatcgtaagatatatga 30458927  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 17573468 - 17573524
Alignment:
Q  216 catggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgt 272  Q
    |||| ||||||||| |||||||| |  |||||||||||||||| |||||||||||||    
T  17573468 catgttagtcaaatcgggatatgtattgtgtatcgttcgaccacttttttgaatcgt 17573524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29444225 - 29444187
Alignment:
Q  1 ctcattgaagtaagttcaacaatatcacaaaagaatagt 39  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  29444225 ctcatagaagtaagctcaacaatatcacaaaagaatagt 29444187  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 7938470 - 7938544
Alignment:
Q  216 catggtagtcaaattgggatatgcaacgtgtatcgttcgaccaattttttgaatcgtgtatcgtaagatacatga 290  Q
    |||| |||||||||  ||||||| | |||||||||||| || | |||||||||||| ||||||||||||||||||    
T  7938470 catgatagtcaaatctggatatgtatcgtgtatcgttcaacaacttttttgaatcgggtatcgtaagatacatga 7938544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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