View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_high_9 (Length: 411)
Name: NF19574_high_9
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 4 - 398
Target Start/End: Complemental strand, 2264919 - 2264524
Alignment:
| Q |
4 |
agattttgtattttgcatagtttaagttaatttaattaattagtttgactgtttgattttcctttagttatctggtattacaaagaaagatacaacaatt |
103 |
Q |
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| T |
2264919 |
agattttgtattttgcatagtttaagttaatttaattaattagtttgactgtttgattttcctttagttatctggtattacaaagaaagatacaacaatt |
2264820 |
T |
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| Q |
104 |
tgactctgcactaataatattctattgataaattgagtgagaaacatgtaactaacttagttattagtggtcaactgtttattgctacccctcgcaaggc |
203 |
Q |
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| T |
2264819 |
tgactctgcactaataatattctattgataaattgagtgagaaacatgtaactaacttagttattagtggtcaactgtttattgctacccctcgcaaggc |
2264720 |
T |
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| Q |
204 |
agnnnnnnnnnncgtattggttttttgttaactttatgtggttagaggtgtaagtcaacaactcaatgccatgtaatagagactaatttgtccggatttt |
303 |
Q |
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| T |
2264719 |
agaaaaaaaaaacgtattggttttttgttaactttatgtggttagaggcgtaagtcaacaactcaatgccatgtaatagagactaatttgtccggatttt |
2264620 |
T |
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| Q |
304 |
gaaagaaattggaaatcaaattttcatttcgacatcac-ttttgtctcattttctcctttcaacaattgatctgatcttcttcatcacttcatttc |
398 |
Q |
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| T |
2264619 |
gaaagaaattggaaatcaaattttcatttccacataactttttgtctcattttctcctttcaacaattgatctgatcttcttcatcacttcatttc |
2264524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 34399680 - 34399731
Alignment:
| Q |
262 |
caactcaatgccatgtaatagagactaatttgtccggattttgaaagaaattg |
314 |
Q |
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| T |
34399680 |
caactcattgtcacgtaataaagactaatttgtc-ggattttgaaagaaattg |
34399731 |
T |
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