View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_10 (Length: 381)
Name: NF19574_low_10
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 41967429 - 41967744
Alignment:
| Q |
1 |
cccttgtatcccgattcaatcattcacatttcacttcctgaaaccggaacgggttgcacggcccggcagcagaaaaaacccaatattttagtcttttaca |
100 |
Q |
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| T |
41967429 |
cccttgtatcccgattcaatcattcacatttcacttcctgaaaccggaacgggttgcacggcccggcagcagaaaaaacccaatattttagtcttttaca |
41967528 |
T |
|
| Q |
101 |
tggggcggtactatgaccgggtcgggtttgccggccccatcagttattgcagggtgaactgcttgtattctagggatttgttttgtaaccttccaattat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41967529 |
tggggcggtactatgaccggatcgggtttgccggccccatcagttattgcagggtgaactgtttgtattctagggatttgttttgtaaccttccaattat |
41967628 |
T |
|
| Q |
201 |
attcgaactattcccaaaagccacacacactcgtgtactttacaacttcccacacatgttctcttgttttacaacttccctcacacgttcttttccttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41967629 |
attcgaactattcccaaaagccacacacactcgtgtactttacaacttcccacacatgttctcttgttttacaacttccctcacacgttcttttccttta |
41967728 |
T |
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| Q |
301 |
caacttcccacaccac |
316 |
Q |
| |
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| T |
41967729 |
caacttcccacaccac |
41967744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 54137583 - 54137489
Alignment:
| Q |
163 |
ttgtattctagggatttgttttgtaaccttccaattatattcgaactattcccaaaagccacacacactcgtgtactttacaacttcccacacat |
257 |
Q |
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| T |
54137583 |
ttgtattctaaggttttgttttgtagccgtccaattaaattggaactattcccaaaagccacacacgttcttgtactttacaacttcccacacat |
54137489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 54227550 - 54227462
Alignment:
| Q |
168 |
ttctagggatttgttttgtaaccttccaattatattcgaactattcccaaaagccaca-cacactcgtgtactttacaacttcccacac |
255 |
Q |
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| T |
54227550 |
ttctagggttttgttttgtaacattccaattaaattggaactattcccaaaagctgcaccacgttcttgtactttacaacttcccacac |
54227462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 24084771 - 24084693
Alignment:
| Q |
177 |
tttgttttgtaaccttccaattatattcgaactattcccaaaagccacacacactcgtgtactttacaacttcccacac |
255 |
Q |
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| T |
24084771 |
tttgttttgtaacttcccaattaaattggaactattccgaaaagccacacatgttcttgtactttacgacttcccacac |
24084693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 32108223 - 32108297
Alignment:
| Q |
136 |
cccatcagttattgcagggtgaactgctt-gtattctagggatttgttttgtaaccttccaattatattcgaacta |
210 |
Q |
| |
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| T |
32108223 |
cccatcagatattacagggtgaactgcttggtattataggg-tttgttttgtaacctcccaattaaatttgaacta |
32108297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 9232855 - 9232794
Alignment:
| Q |
163 |
ttgtattctagggatttgttttgtaaccttccaattatattcgaactattcccaaaagccac |
224 |
Q |
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|||||||| || | ||||||||||||||| ||||||| || || ||||||||||||||||| |
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| T |
9232855 |
ttgtattcaagagttttgttttgtaacctaccaattaatttggagctattcccaaaagccac |
9232794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 30459194 - 30459133
Alignment:
| Q |
163 |
ttgtattctagggatttgttttgtaaccttccaattatattcgaactattcccaaaagccac |
224 |
Q |
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|||||||| || | ||||||||||||||| ||||||| || || ||||||||||||||||| |
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| T |
30459194 |
ttgtattcaagagttttgttttgtaacctaccaattaatttggagctattcccaaaagccac |
30459133 |
T |
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