View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_11 (Length: 374)
Name: NF19574_low_11
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 32650971 - 32650620
Alignment:
| Q |
14 |
ttctccaatttctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacataatcgaagaaggagacagaagatatttatagtg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
32650971 |
ttctccaatttctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacacaattgaagaaggagacagaagatatttacagtg |
32650872 |
T |
|
| Q |
114 |
gttagcnnnnnnnaatcaactctttatttctcaaaacaaaaatctttcattcgttcatctctctccaccgctctcatctgcttcttcgatc----tcagc |
209 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32650871 |
gttagctttttttaatcaactctttatttctcaaaccaaaaatctttcattcgttcatctctctccaccgctctcatctgcttcttcgatcgatctcagc |
32650772 |
T |
|
| Q |
210 |
atctcaattcgtttactctttcctttcattaatttgcattatcgccgtgataaatggatcagaattgttctgatatttacacaaatataaacaaacccct |
309 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32650771 |
atctcaattcgtttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaacccct |
32650672 |
T |
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| Q |
310 |
catgaaatgatttcagttaatcattatgattgttcacgttctggtacttttt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32650671 |
catgaaatgatttcagttaatcattatgattgttcacgttctggtacttttt |
32650620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 33854179 - 33854239
Alignment:
| Q |
48 |
ttcctctccacaactccaaccccatatccacataatcgaagaaggagacagaagatattta |
108 |
Q |
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|||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
33854179 |
ttcctctccataactccaaacccatatccacacaatcgaagaaggagacaaaagatattta |
33854239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 33854114 - 33854148
Alignment:
| Q |
14 |
ttctccaatttctatcaccttcttccactttgatt |
48 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
33854114 |
ttctccaatttctatcaccttcgtccactttgatt |
33854148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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