View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_12 (Length: 370)
Name: NF19574_low_12
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 43 - 354
Target Start/End: Complemental strand, 54859577 - 54859266
Alignment:
| Q |
43 |
ttattttctgtaataataggaaaatatatatgcaaaggttgaactcacacttgaactatatcaggagtgagagcaccagtagcggaattgtagttgaatc |
142 |
Q |
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| T |
54859577 |
ttattttctgtaataataggaaaatatatatgcaaaggatgaactcacacttgaactatatcaggagtgagagcaccagtagcggaattgtagttgaatc |
54859478 |
T |
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| Q |
143 |
gacagaagaaatcatcatcaccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatc |
242 |
Q |
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| T |
54859477 |
gacagaagaaatcatcatcaccaacaacatcaagcttcatgtacttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatc |
54859378 |
T |
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| Q |
243 |
aaaatgatcagatagaataagctcctttgagccatggaaatgacgccgacccttctttgtctcctccggccagtaataccaacggacacgaacgtctcgt |
342 |
Q |
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| T |
54859377 |
aaaatgatcagatagaataagctcctttgagccatggaaatgacgccgacccttctttgtctcctccggccagtaataccaacggacacgaacgtctcgt |
54859278 |
T |
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| Q |
343 |
gaatcagctttc |
354 |
Q |
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| T |
54859277 |
gaatcagctttc |
54859266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 54853918 - 54853725
Alignment:
| Q |
82 |
tgaactcacacttgaactatatcaggagtgagagcaccagtagcggaattgtagttgaatcgacagaagaaatcatcatcaccaacaacatcaagcttca |
181 |
Q |
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| T |
54853918 |
tgaactcacactgcaactctatcaggattgaaagcaccagtagcagaattgtactcaaatcgacagaagaaatcatcattaccaacagcatcaagcttag |
54853819 |
T |
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| Q |
182 |
tgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgatcagatagaataagctcctttgagcc |
275 |
Q |
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| T |
54853818 |
tgtagctcttgaaaccatgaacaacacactttccttcaattgtatcagcactctgaacatcaaaatgatctgacagaaaaagctcttttgagcc |
54853725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 54859638 - 54859610
Alignment:
| Q |
13 |
aatatttaagcaagaatcaagataaagat |
41 |
Q |
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| T |
54859638 |
aatatttaagcaagaatcaagataaagat |
54859610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 38474817 - 38474728
Alignment:
| Q |
161 |
caccaacaacatcaagcttcatgtagttcttcaaactgtgaacagtacattttccttcgattgtatcaacactctgaacatcaaaatgat |
250 |
Q |
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|||| ||||| |||||||||||||||||||||||| |||| ||| ||| || ||||| ||||| ||| |||| ||||||||| |||||| |
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| T |
38474817 |
cacctacaacttcaagcttcatgtagttcttcaaattgtgcacaaaacacttcccttcaattgtgtcagcactatgaacatcataatgat |
38474728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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