View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_14 (Length: 350)
Name: NF19574_low_14
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 171 - 340
Target Start/End: Original strand, 28636848 - 28637021
Alignment:
| Q |
171 |
tttgtaagagccaatcattccaaaatacatctttcttcctaacacaaga---ttttctttctcttcctcaacaaa-cacttggcaaccaaaacagaaaag |
266 |
Q |
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| T |
28636848 |
tttgtaagagccaatcattccaaaatacatctttcttcctaacacaagaagattttctttctcttcctcaacaaaacacttggcaaccaaaacagaaaag |
28636947 |
T |
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| Q |
267 |
ttacctgacgaactaaatttacaactcataatataattatcgtaacaactgtagttatagaaccaattcctatg |
340 |
Q |
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| T |
28636948 |
ttacctgacgaactaaatttacaactcataatataattatcgtaacaactgtagttatagaaccaattcctatg |
28637021 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 28636773 - 28636843
Alignment:
| Q |
18 |
attatagacactcaatatgccattactacatgaatcacttgaaattttactttcgtgtaatgttatcccaa |
88 |
Q |
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| T |
28636773 |
attatagacactcgatatgccattactacatgaatcacttgaaattttactttcgtgtaatgttatcccaa |
28636843 |
T |
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