View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_2 (Length: 789)
Name: NF19574_low_2
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 678; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 12 - 773
Target Start/End: Original strand, 30474120 - 30474879
Alignment:
| Q |
12 |
gagatgaagaagatgaggatcttttgaaaaaggtagatgctttgcggatggatttaagtgacaaagaagagttaattgaagacttaaaagatttgaacca |
111 |
Q |
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| T |
30474120 |
gagatgaagaagatgaggatcttttgaaagaggtagatgctttgcggatggatttaagtgacaaagaagagttacttgaagacttaaatgatttgaacct |
30474219 |
T |
|
| Q |
112 |
aacactaatcattaaggagcgtcagagtaatgatgagttgttggatgctcgaaaagaattgattcgtgtaagtgtttttgtcccttcaaattttactcat |
211 |
Q |
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| T |
30474220 |
aacactaatcattaaggagcgtcggagtaatgatgagttgttggatgctcgaaaagaattgatttgtgtaagtgtttttgtcccttcaaattttactcat |
30474319 |
T |
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| Q |
212 |
ttgatgatcaatgatcatctagtttacttttttggctcatgggctgataaacttttgttccttttattttaatatgattttacttgcctgtttaaagttg |
311 |
Q |
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| T |
30474320 |
ttgatgatcaatgatcat--agtttacttttttggctcatgggctgataaacttttgttccttttattttaatatgattttacttgcctgtttaaagttg |
30474417 |
T |
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| Q |
312 |
aatgaataacatctatggtgttgtgtgtgtgatcagaatagtgaaatctagttacctgttggcttgttttgctccttgnnnnnnngtttcatcggattat |
411 |
Q |
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| T |
30474418 |
aatgaataacatctatggtgttgtgtgtgtgatcagaatagtgaaatctagttacctgttgtcttgttttgctccttgtttttttgtttcatcggattat |
30474517 |
T |
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| Q |
412 |
gcagacaagactaaactgtgcttttctacgaattcacttcttgtttgtcacattgcttaaagtatgcattatatgttttgaaaatacatatttactgttt |
511 |
Q |
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| T |
30474518 |
gcagacaagactaaactgtacttttctacgaattcacttcttgtttgtcacattgcttaaagtatgcattatatgttttgaacatacatatttactgttt |
30474617 |
T |
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| Q |
512 |
gttatttcttttcttgacaattgttaaagagtttttgcatctctcaggtcattaaagaaatgtcaacaagtgacaaacatattggtgtaaagagaatggg |
611 |
Q |
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| T |
30474618 |
gttatttcttttcttgacaatcgttcaagagtttttgcatctctcaggtcattaaagaaatgtcaaccagtgacaaacatattggtgtaaagagaatggg |
30474717 |
T |
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| Q |
612 |
ggaaatcaatatagaaccattccttgctgctatgaagaaaagattcaatgcgagaacagctaaaaatagagctgcaaaattatgctcttcgtgggaagag |
711 |
Q |
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| T |
30474718 |
ggaaatcaatatagaaccattccttgctgctatgaagaaaagattcaatgcgagaacagctaaaaatagagctgcaaaattatgctcttcgtgggaagag |
30474817 |
T |
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| Q |
712 |
agtataaaggacccgaattggcatccatttaaagttgttttggtggatagtgatgcacatgt |
773 |
Q |
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| T |
30474818 |
agtataaaggacccaaattggcatccatttaaagttgttttggtggatagtgatgcacatgt |
30474879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 30465905 - 30466046
Alignment:
| Q |
41 |
aaggtagatgctttgcggatggatttaagtgacaaagaagagttaattgaagacttaaaagatttgaaccaaacactaatcattaaggagcgtcagagta |
140 |
Q |
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| T |
30465905 |
aaggtagatgctttgctgatgaatttgagagacaaagaagagtcacttgaagagttagaagaatttaaccaaaaactaatcattaaggagcataagagta |
30466004 |
T |
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| Q |
141 |
atgatgagttgttggatgctcgaaaagaattgattcgtgtaa |
182 |
Q |
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| T |
30466005 |
atgatgagttgcaatatgctcgaaaaatattgattcatgtaa |
30466046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 30447098 - 30447249
Alignment:
| Q |
33 |
ttttgaaaaaggtagatgctttgcggatggatttaagtgacaaagaagagttaattgaagacttaaaagatttgaaccaaacactaatcattaaggagcg |
132 |
Q |
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| T |
30447098 |
ttttgaagaaggtagatgatttgcatatgggtttaagggagaaggaacagtcacttcaagacttagatgcactgaaccaaacactaatcatcaaggagcg |
30447197 |
T |
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| Q |
133 |
tcagagtaatgatgagttgttggatgctcgaaaagaattgattcgtgtaagt |
184 |
Q |
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| T |
30447198 |
taagagtaacgatgagctgcaagatgctcgaaaagaattgatcagtgtaagt |
30447249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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