View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19574_low_21 (Length: 301)

Name: NF19574_low_21
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19574_low_21
NF19574_low_21
[»] chr8 (6 HSPs)
chr8 (1-301)||(24744411-24744712)
chr8 (1-301)||(43583310-43583613)
chr8 (1-143)||(24749988-24750130)
chr8 (1-109)||(43579697-43579805)
chr8 (1-101)||(22619912-22620012)
chr8 (1-61)||(9190481-9190541)
[»] chr6 (3 HSPs)
chr6 (1-301)||(26452031-26452332)
chr6 (1-143)||(26446522-26446664)
chr6 (1-60)||(13800048-13800107)
[»] chr5 (4 HSPs)
chr5 (1-301)||(21006157-21006458)
chr5 (1-109)||(21011799-21011907)
chr5 (28-108)||(30253630-30253710)
chr5 (3-107)||(21790518-21790622)
[»] chr1 (9 HSPs)
chr1 (1-150)||(24501935-24502084)
chr1 (1-105)||(48332732-48332836)
chr1 (1-187)||(32960126-32960314)
chr1 (1-101)||(24517613-24517713)
chr1 (1-101)||(40109378-40109478)
chr1 (1-101)||(8092615-8092715)
chr1 (2-60)||(14765134-14765192)
chr1 (1-101)||(2973007-2973107)
chr1 (1-101)||(40110651-40110751)
[»] chr7 (4 HSPs)
chr7 (1-108)||(7338159-7338266)
chr7 (1-82)||(132017-132098)
chr7 (1-67)||(4167468-4167534)
chr7 (1-61)||(47537079-47537139)
[»] chr3 (2 HSPs)
chr3 (1-82)||(48866158-48866239)
chr3 (1-101)||(48867429-48867529)
[»] chr4 (3 HSPs)
chr4 (1-101)||(41349524-41349624)
chr4 (2-60)||(38417571-38417629)
chr4 (28-101)||(8516822-8516895)
[»] chr2 (2 HSPs)
chr2 (1-67)||(7983728-7983794)
chr2 (3-107)||(38801191-38801295)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 24744411 - 24744712
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24744411 cttaacttattttttcttctcacttcagttccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 24744510  T
Q  101 aactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 199  Q
    |||||||||        |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24744511 aactttttgaaaaaaaacgttaactatgtacaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 24744610  T
Q  200 gaaatgtcaaaaattagggtttcattgatctcattcctccttctctcttcttctccatcgtgagtgaccaccatagccaaaaccttcactcctgttcttc 299  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24744611 gaaatgtcaaaaattagggtttcattgatcacattcctccttctctcttcttctccatcgtgagtgaccaccatagccaaaaccttcactcttgttcttc 24744710  T
Q  300 tt 301  Q
    ||    
T  24744711 tt 24744712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 43583613 - 43583310
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||  ||||| |||||||||||    
T  43583613 cttaatttattttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttctgtt 43583514  T
Q  101 aactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 199  Q
    |||||||||        ||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43583513 aactttttgaaaaaaaacgttaactctgcataagtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 43583414  T
Q  200 gaaatgtcaaaaattagggtttcattgatctcattcctccttctctcttcttctccatcgtgag--tgaccaccatagccaaaaccttcactcctgttct 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |  | | |||||||||||||||||||| ||||||    
T  43583413 gaaatgtcaaaaattagggttttattgatctcattcctccttctctcttcttctccatcgtgagtctatctatcatagccaaaaccttcactcttgttct 43583314  T
Q  298 tctt 301  Q
    ||||    
T  43583313 tctt 43583310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 24750130 - 24749988
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24750130 cttaacttattttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgtt 24750031  T
Q  101 aactttttgnnnnnnncgttaactctgtacaggtggttgtcca 143  Q
    |||||||||       |||||||||||||||||||| ||||||    
T  24750030 aactttttgaaaacaacgttaactctgtacaggtggctgtcca 24749988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43579697 - 43579805
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43579697 cttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgtt 43579796  T
Q  101 aactttttg 109  Q
    |||||||||    
T  43579797 aactttttg 43579805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22619912 - 22620012
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| ||   ||||||||||||||| ||||||||||||||||  ||| |  ||||| ||||||| |  ||||| ||||||||    
T  22619912 cttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcctctgtttactaatgtggtcttttctgtt 22620011  T
Q  101 a 101  Q
    |    
T  22620012 a 22620012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9190541 - 9190481
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 61  Q
    |||||||||||||   |||||| || |||||||||||| |||| ||| |||||||||||||    
T  9190541 cttaacttattttaatttctcagtttagtcccttaactattaaatgtttcaatttggtcct 9190481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 26452332 - 26452031
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26452332 cttaacttattttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgtt 26452233  T
Q  101 aactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 199  Q
    || || ||         |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452232 aatttgttaaaaaaaaacgttaactatgttcaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 26452133  T
Q  200 gaaatgtcaaaaattagggtttcattgatctcattcctccttctctcttcttctccatcgtgagtgaccaccatagccaaaaccttcactcctgttcttc 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26452132 gaaatgtcaaaaattagggttttattgatctcattcctccttctctcttcttctccatcgtgagtgaccaccatagccaaaaccttcactcttgttcttc 26452033  T
Q  300 tt 301  Q
    ||    
T  26452032 tt 26452031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 26446522 - 26446664
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||    
T  26446522 cttaacttattttttcttctcacttcagtctcttaacttttaaatgtgtcaatttggtcctgtaagtactcttctgtttacttagttggtcctttctatt 26446621  T
Q  101 aactttttgnnnnnnncgttaactctgtacaggtggttgtcca 143  Q
    |||||||||       |||||||||||||||||||| ||||||    
T  26446622 aactttttgaaaaaaacgttaactctgtacaggtggctgtcca 26446664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13800048 - 13800107
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 60  Q
    ||||||||||||| | |||||| ||  ||||||||||| |||||||||||||||||||||    
T  13800048 cttaacttattttattttctcagtttggtcccttaactattaattgtgtcaatttggtcc 13800107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 21006157 - 21006458
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||  ||||| ||||||| |||    
T  21006157 cttaacttattttttcttctcactttagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttcagtt 21006256  T
Q  101 aactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 199  Q
    |||||||||        ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21006257 aactttttgaaaaaaaacgttaactctgcacaagtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggat 21006356  T
Q  200 gaaatgtcaaaaattagggtttcattgatctcattcctccttctctcttcttctccatcgtgagtgaccaccatagccaaaaccttcactcctgttcttc 299  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  21006357 gaaatgtcaaaaattagggttttattgatctcattcctccttctctcttcttctccatcgtgagtcactaccatagccaaaaccttcactcttgttcttc 21006456  T
Q  300 tt 301  Q
    ||    
T  21006457 tt 21006458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 21011907 - 21011799
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||    
T  21011907 cttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtcagtactcttctgtttacttagttggtcctttctgtt 21011808  T
Q  101 aactttttg 109  Q
    |||||||||    
T  21011807 aactttttg 21011799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 30253630 - 30253710
Alignment:
Q  28 gtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgttaacttttt 108  Q
    |||||| |||| |||| |||||||||||||||   |||||  |||||| |||||||||||||||| || |||||| |||||    
T  30253630 gtccctcaactattaagtgtgtcaatttggtctcataagtcttcctccatttacttagttggtccattttgttaagttttt 30253710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 21790518 - 21790622
Alignment:
Q  3 taacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgttaa 102  Q
    |||||||||||| | | ||| ||  ||||| ||| ||| |||||| |||| |||||||  ||||||  |||||||||||| | ||||||| |||||||||    
T  21790518 taacttatttttgcatttcaatttggtcccctaagtttaaattgtctcaaattggtcccctaagtatacctccgtttactcaattggtcccttctgttaa 21790617  T
Q  103 ctttt 107  Q
     ||||    
T  21790618 ttttt 21790622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 24502084 - 24501935
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||  ||||| |||||||||||    
T  24502084 cttaatttattttttcttctcacttcattcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttctgtt 24501985  T
Q  101 aactttttgnnnnnnncgttaactctgtacaggtggttgtccacgttggc 150  Q
    |||||||||       |||||| ||||||||||||| |||||||||||||    
T  24501984 aactttttgaaaaaaacgttaagtctgtacaggtggctgtccacgttggc 24501935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48332732 - 48332836
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  48332732 cttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctataaatactcttccgtttacttagttggtcctttctgtt 48332831  T
Q  101 aactt 105  Q
    |||||    
T  48332832 aactt 48332836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 32960314 - 32960126
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| ||  ||||| | |||||||  ||||  |||||||| ||    
T  32960314 cttaacttattttttcttctcacttcagttccttaactattaaatgtgtcaatttggtcctcta--tactctttcgtttacccagttaatcctttctatt 32960217  T
Q  101 aacttttt----gnnnnnnncgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaat 187  Q
    ||||||||            | ||||||||| ||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  32960216 aacttttttttaaaaaaaaactttaactctgcacatgtggttctccatgttggccaatcacttgaggacatggaaaatcactctcagcaat 32960126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24517713 - 24517613
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| || | |||||||| |||||| ||||||||||||||||  ||| |  ||||| ||||||| |  ||||||||||||||    
T  24517713 cttaacttattttattttctcagtttaatcccttaatttttaagtgtgtcaatttggtcccataaatcttcctctgtttactaatgtggtcctttctgtt 24517614  T
Q  101 a 101  Q
    |    
T  24517613 a 24517613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 40109378 - 40109478
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| ||   ||||||||||||||| ||||||||||||||||  ||| |  || |||||||||| |  ||||||||||||||    
T  40109378 cttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcatccgtttactaatgtggtcctttctgtt 40109477  T
Q  101 a 101  Q
    |    
T  40109478 a 40109478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8092615 - 8092715
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| |  |||||||||||| |||| ||| |||||||||| |  ||| |  ||||||||||||| | ||||||||||| |||    
T  8092615 cttaacttattttattttctcagtgtagtcccttaactattaagtgtatcaatttggttccataaatcttcctccgtttactgatttggtcctttccgtt 8092714  T
Q  101 a 101  Q
    |    
T  8092715 a 8092715  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 14765192 - 14765134
Alignment:
Q  2 ttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 60  Q
    |||||||||||| | |||||| ||  ||||||||||| |||| ||||||||||||||||    
T  14765192 ttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcc 14765134  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2973107 - 2973007
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagt-tggtcctttctgt 99  Q
    ||||||||||||||| || ||| || |||||||||| | | || ||| ||||||||||||| |||||  | | |||||||| |||| |||||||||||||    
T  2973107 cttaacttattttttgttttcattttagtcccttaattataaagtgtctcaatttggtcctataagtcttaccccgtttac-tagtgtggtcctttctgt 2973009  T
Q  100 ta 101  Q
    ||    
T  2973008 ta 2973007  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40110751 - 40110651
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| ||   |||||||||| |||| ||||||||||||||||  |||||  ||||| ||||| | |  ||||||| ||||||    
T  40110751 cttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtcccataagtcttcctctgtttattaatgtggtcctctctgtt 40110652  T
Q  101 a 101  Q
    |    
T  40110651 a 40110651  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7338159 - 7338266
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||||||||||||||||| |||||||||  |||| ||||||||||| ||||||||||| ||| ||||||| |   |||| |||||| ||||    
T  7338159 cttaacttattttttcttctcacttcaatcccttaacaattaaatgtgtcaatttagtcctgtaagttctcttccgtttgcccggttgatcctttttgtt 7338258  T
Q  101 aacttttt 108  Q
    ||||||||    
T  7338259 aacttttt 7338266  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 132098 - 132017
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttact 82  Q
    ||||||||||||| | |||||| ||  ||||||||||| |||| |||||| |||||||||  |||||  |||||||||||||    
T  132098 cttaacttattttattttctcagtttggtcccttaactattaagtgtgtcgatttggtcccataagtcttcctccgtttact 132017  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4167468 - 4167534
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagt 67  Q
    ||||||||||||| | |||||| || | |||||||||| |||| |||||||||||| |||| |||||    
T  4167468 cttaacttattttattttctcagtttaatcccttaactattaagtgtgtcaatttgatcctataagt 4167534  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 47537139 - 47537079
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 61  Q
    |||||||||||||  ||||||| ||  ||||||||||| |||| ||| |||||||||||||    
T  47537139 cttaacttattttaacttctcagtttggtcccttaactattaaatgtttcaatttggtcct 47537079  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48866158 - 48866239
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttact 82  Q
    ||||||||||||| | |||||| || ||||||| |||| |||| ||||||||||||||||| |||||  || ||||||||||    
T  48866158 cttaacttattttattttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataagtcttcttccgtttact 48866239  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48867529 - 48867429
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| ||  ||||||||||| |||| ||||||||||||||||  | |||  | || |||||||| |  ||||||||||||||    
T  48867529 cttaacttattttattttctcaatttggtcccttaactattaagtgtgtcaatttggtcccattagtctttctacgtttactaatgtggtcctttctgtt 48867430  T
Q  101 a 101  Q
    |    
T  48867429 a 48867429  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 41349624 - 41349524
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 100  Q
    ||||||||||||| | |||||| ||   ||||||||||||||| |||||||||||| |||  ||| |  |||||| |||||| |  ||||||||||||||    
T  41349624 cttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttgatcccataaatcttcctccatttactaatgtggtcctttctgtt 41349525  T
Q  101 a 101  Q
    |    
T  41349524 a 41349524  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 38417571 - 38417629
Alignment:
Q  2 ttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 60  Q
    |||||||||||| | |||||| ||  ||||||||||| |||| ||||||||||||||||    
T  38417571 ttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcc 38417629  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 8516895 - 8516822
Alignment:
Q  28 gtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtta 101  Q
    ||||||||||||| |||||| ||||||||||||  ||| ||  ||||||||||| || | ||||| ||||||||    
T  8516895 gtcccttaactttaaattgtctcaatttggtcccttaactatacctccgtttacgtaataggtcccttctgtta 8516822  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7983794 - 7983728
Alignment:
Q  1 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagt 67  Q
    ||||||||||||| | |||||| || | | |||||||| |||| ||||||||||||||||| |||||    
T  7983794 cttaacttattttattttctcagtttaattccttaactattaagtgtgtcaatttggtcctataagt 7983728  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 38801295 - 38801191
Alignment:
Q  3 taacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgttaa 102  Q
    |||||||||||| | | ||| ||  ||||| ||||||| |||||| |||| |||||||  ||||||  |||| ||||||| | ||||||| |||||||||    
T  38801295 taacttatttttgcatttcaatttggtcccctaactttaaattgtctcaaattggtcccctaagtatacctctgtttactcaattggtcccttctgttaa 38801196  T
Q  103 ctttt 107  Q
     ||||    
T  38801195 ttttt 38801191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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