View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_28 (Length: 222)
Name: NF19574_low_28
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_28 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 35757356 - 35757559
Alignment:
| Q |
12 |
atgaaaacataaggaaatgaaatgaaatgtgaattatcaaagtagttactagtcgataatcgataatagaaccgaatatagcgagatgactttaaggcac |
111 |
Q |
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| T |
35757356 |
atgaaaacataaggaaatgaaatgaaatgtgaattatcaaggtagttactagtccataa-------tagaaccgaatattgcgagatgactttgaggcaa |
35757448 |
T |
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| Q |
112 |
acacagaagtaaataattgctcaaaccaaaactaataagattaagatgtaaaacccataatgtataaaaacatgaaaaatatccaacaaaattattaata |
211 |
Q |
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| T |
35757449 |
acacagaagtaaataattgctcaaaccaaaactaataagattaagatgtaaaacccataatgtatcaaaacatgaaaaatatccaacaaaattattaata |
35757548 |
T |
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| Q |
212 |
ggattcatttg |
222 |
Q |
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| T |
35757549 |
ggattcatttg |
35757559 |
T |
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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 25694027 - 25694198
Alignment:
| Q |
43 |
aattatcaaagtagttactagtcgataatcgataatagaaccgaatatagcgagatgactttaaggcacacacagaagtaaat-aattgctcaaaccaaa |
141 |
Q |
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| T |
25694027 |
aattatcaaagtagttactagtcgataat-------aaaacagaatatagcgagatt--tttaaggcacacacagaaataaaacaatagcttaaaccaaa |
25694117 |
T |
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| Q |
142 |
actaataagattaagatgtaaaacccataatgtataaaaacatgaaaaatatccaacaaaattattaataggattcatttg |
222 |
Q |
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| T |
25694118 |
actaatgagattaagatgtaaaacccataatgtatcaaaacatgaaaaatatccaacaagattattaataggattcatttg |
25694198 |
T |
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