View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_4 (Length: 497)
Name: NF19574_low_4
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 17778968 - 17779434
Alignment:
| Q |
15 |
atcataggctatctgtagaatattcaagaaaacaaattctacggctcaaagagctttgtctcactcttgggtttcttccctatctgaaacaagaacctct |
114 |
Q |
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| T |
17778968 |
atcatgggctatctgtagaatattcaagaaaacaaattctacggctcaaagagctttgtctcactcttgggtttcttccctatctgaaacaagaacctct |
17779067 |
T |
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| Q |
115 |
aatatgctaaccaaaaatcaagaaatcacccaattttgttcaagcaacatctcattgacaaagaacacatccttggccaaccacttctacactaacaaca |
214 |
Q |
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| T |
17779068 |
aatatgctaaccaaaaatcaagaaatcacccaattttgttcaagcaacatctcattgacaaagaacacatccttggccaaccacttctacactaacaaca |
17779167 |
T |
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| Q |
215 |
atgatagccaaaattttgatgtagatgttaccccttataaatccattattagtccattactacatgaagatcttaatacaaacttgatattctcatcatc |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17779168 |
atgatagccaaaattttgatgaagatgttaccccttataaatccattattagtccattactacatgaagatcttaatacaagcttgatattctcatcatc |
17779267 |
T |
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| Q |
315 |
atctccacttgaaacatctaacactaatagtgatattattaccaaatctacaatggatgtttcatcaatgttgttgaatatgtcatcatcatcctcaatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17779268 |
atctccacttgaaacatctaacactaatagtgatattatttccaaatctacaatggatgtttcatcaatgttgttgaatatgtcatcatcatcctcaatg |
17779367 |
T |
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| Q |
415 |
cttggtgactttagcaagacatgtgatgaggttacaactacaaatttcatgaatggtgggttgcaag |
481 |
Q |
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| T |
17779368 |
cttggtgactttagcaagacatgtgatgaggttacaactacaaatttcatgaatggtgggttgcaag |
17779434 |
T |
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