View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_5 (Length: 490)
Name: NF19574_low_5
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 30114570 - 30115034
Alignment:
| Q |
12 |
atgaaaaacttccaaccaataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaagg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114570 |
atgaaaaacttccaaccaataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaagg |
30114669 |
T |
|
| Q |
112 |
tgatacatactttcacttggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114670 |
tgatacatactttcacttggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaatt |
30114769 |
T |
|
| Q |
212 |
ggtgccgaggtaacagttccagtactttgtgcttgtcctacaacaaaacaggtggcgaaagggatcacttccttgctggtttacatagtgaactatggtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114770 |
ggtgccgaggtaacagttccagtactttgtgcttgtcctacaacaacacagatggcgaaagggatcacttccttgctggtttacatagtgaactatggtg |
30114869 |
T |
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| Q |
312 |
aaactgttaagtctataggagaggcttatggtgttgacgaacaaagcatattagaggcaaatgagttgcaaccaagtgaaaacagaagtgtgattctctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114870 |
aaactgttaagtctataggagaggcttatggtgttgatgaacaaagcatattagaggcaaatgagttgcaaccaagtgaaaacagaagtgtgattctctt |
30114969 |
T |
|
| Q |
412 |
tgcgttgacaccgatattagttcctcttagaggcaagagctgcaaagaagatcctgatagtttct |
476 |
Q |
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| T |
30114970 |
tgcgttgacaccgatattacttcctcttagaggcaagagctgcaaagaggatcctgatagtttct |
30115034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 30116965 - 30117155
Alignment:
| Q |
29 |
aataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtc-caaaaaggtgatacatactttcac |
127 |
Q |
| |
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||||||| |||| |||||||||||| || |||| ||| ||||||||||||||||||||||| || ||||||||| ||||||||||| | || | |||| |
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| T |
30116965 |
aataaaataatcgttgtccctatctgttgttcatattcaggaaatatctaccaacataacaccccctacactgtcaaaaaaaggtgattcctattatcac |
30117064 |
T |
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| Q |
128 |
ttggtaaatgaaacttacc----aaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttc--tgaaaacattgcaattg |
212 |
Q |
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| T |
30117065 |
ttggtaaatggtacttaccaaagaaagcctcacgccatgtcaggctacgaagggtcagaattactatgcttctgtgaaaacatttcaattg |
30117155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 449
Target Start/End: Original strand, 30104375 - 30104801
Alignment:
| Q |
29 |
aataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaaggtgatacatactttcact |
128 |
Q |
| |
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|||||| ||||||||||||| |||| || |||||| ||||||||||||||| |||| || ||||| |||| | | |||||| |||| | | | |
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| T |
30104375 |
aataaatcaatcattgtcccagtcttttgttcatgtgatggaaatatctaccagcatagtacatcttactctgtaaagcagaatgatacttactatgagt |
30104474 |
T |
|
| Q |
129 |
tggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaattggtgccgaggtaacagt |
228 |
Q |
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||||||| |||||||||||| |||| ||||| || || || |||| ||||||||| || |||||| ||| ||| | ||| ||| ||| | ||||| |
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| T |
30104475 |
tggtaaaagaaacttaccaaggccttacaacctgccaggcattgatgggtcagaactactatgctcctgtctcaattcaacttgatgctgagctcacagt |
30104574 |
T |
|
| Q |
229 |
tccagtactttgtgcttgtcctacaacaaaacaggtggcgaaagggatcacttccttgctggtttacatagtgaactatggtgaaactgttaagtctata |
328 |
Q |
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|||| |||| ||||||||||| ||| |||| | | ||| |||||| | || ||||| || ||| |||| ||||||||||||||||| |||||||| ||| |
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| T |
30104575 |
tccaatactatgtgcttgtcccacagcaaacctgacggcaaaaggggttacctccttactcgttcacatggtgaactatggtgaaacggttaagtcgata |
30104674 |
T |
|
| Q |
329 |
ggagaggcttatggtgttgacgaacaaagcatattagaggcaaatgagtt------gcaaccaagtgaaaacagaagtgtgattctctttgcgttgacac |
422 |
Q |
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||||| |||||||||||||| ||||| || || |||||| |||||||| || | ||||| |||||| |||||||| |||||||| | ||| | |
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| T |
30104675 |
ggagaagcttatggtgttgatgaacatagtatgcgagaggccaatgagttgtcagggctgcaaagtgcaaacagcagtgtgatcctctttgcatcgacgc |
30104774 |
T |
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| Q |
423 |
cgatattagttcctcttagaggcaaga |
449 |
Q |
| |
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| ||| |||||||||| ||| |||||| |
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| T |
30104775 |
ctatactagttcctctgagacgcaaga |
30104801 |
T |
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