View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19574_low_6 (Length: 462)
Name: NF19574_low_6
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 2265307 - 2264922
Alignment:
| Q |
17 |
actttttatgttgtatgatctatgtttggtggacaaaatattattttgacattttagagacatgttattttgtcatataagctttatgaaaagattgatt |
116 |
Q |
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| T |
2265307 |
actttttatgttgtatgatctatgtttggtggacaaaatattattttgacattttagagacatgttattttgtcatataagctttatgaaaagattgatt |
2265208 |
T |
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| Q |
117 |
tatagaaactatacaatgcaacaggtggaatttgatagcaggtcgcattccaggtcgtaaagcagaagaaatagagagattctggattatgagacacact |
216 |
Q |
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| T |
2265207 |
tatagaaactatacaatgcaacaggtggaatttgatagcaggtcgcattccaggtcgtaaagcagaagaaatagagagattctggattatgagacacact |
2265108 |
T |
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| Q |
217 |
gatgctttttctgccaaaagaaagaagtgaacataaagcaaattaaattaagactctttattttgtttgttcaattatatctctctcctaggcataatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2265107 |
gatgctttttctgccaaaagaaagaagtgaacataaagcaaattaaattaagactctttattttgtttgttcaattatatctctctcctaggcataatta |
2265008 |
T |
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| Q |
317 |
ttctagcatataaactttgttttggattttaaagaattatttgtattgcttctcgttgaaggtttgacacttccattccatgtctcaagcaaagctttat |
416 |
Q |
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| T |
2265007 |
ttctagcata-------------------taaagaattatttgtattgcttctcgttgaaggtttgacacttccattccatgtctcaagc-aagctttat |
2264928 |
T |
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