View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19574_low_7 (Length: 437)
Name: NF19574_low_7
Description: NF19574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19574_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 10298766 - 10298364
Alignment:
| Q |
16 |
atgaaaaaggctaccttaatcagtgttatagtaacaaccattttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtcctggaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298766 |
atgaaaaaggctaccttaatcagtgttatagtaacaaccattttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtcctggaa |
10298667 |
T |
|
| Q |
116 |
accttctaaccggtttcggtttctataatcctttctggctcctcgatatagccaatgccgcaattgttatccaccttgttggtgcttttcaagtttacgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298666 |
accttctaaccggtttcggtttctataatcctttctggctcctcgatatagccaatgccgcaattgttatccaccttgttggtgcttttcaagtttacgt |
10298567 |
T |
|
| Q |
216 |
ccaacccttatactcagtagttgagaaaaccgcagctgaaagattcccggatagtgatttcatcaacaaagacattgaaatttcgatcccttgcgtcgcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298566 |
ccaacccttatactcagtagttgagaaaaccgcagctgaaagattcccggatagtgatttcgtcaacaaagacattgaaatttcgatcccttgcgtcgcc |
10298467 |
T |
|
| Q |
316 |
tctcctttaaaaatcaacctctttagattggtttggaggtcaatctttgtgatcataacaactgtaatatcaatgcttctaccattcttcaatgacatcg |
415 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298466 |
tctccgttaaaaatcaacctctttagattggtttggaggtcaatctttgtgatcataacaactgtaatatcaatgcttctaccattcttcaatgacatcg |
10298367 |
T |
|
| Q |
416 |
ttg |
418 |
Q |
| |
|
||| |
|
|
| T |
10298366 |
ttg |
10298364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 10295113 - 10294987
Alignment:
| Q |
41 |
ttatagtaacaaccattttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtcctggaaaccttctaaccggtttcggtttcta |
140 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| || | |||||||||||||| ||| |||||||| |
|
|
| T |
10295113 |
ttatagtcacaaccattttctacatgatgtacggttgttttggatacgcaacttttggagactcaagccccgtaaaccttctaaccgtttttggtttcta |
10295014 |
T |
|
| Q |
141 |
taatcctttctggctcctcgatatagc |
167 |
Q |
| |
|
||| |||| |||||||| |||||||| |
|
|
| T |
10295013 |
taacccttcttggctcctagatatagc |
10294987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 40208916 - 40209060
Alignment:
| Q |
56 |
ttttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtcctggaaaccttctaaccggtttcggtttctataatcctttctggct |
155 |
Q |
| |
|
||||||||||| | ||||| ||||| |||||||| || |||||| | |||||||||||||||||| |||||||||| ||||||||||| || || ||||| |
|
|
| T |
40208916 |
ttttctacatgctttgtggctgttttggatacgcggcatttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccattttggct |
40209015 |
T |
|
| Q |
156 |
cctcgatatagccaatgccgcaattgttatccaccttgttggtgc |
200 |
Q |
| |
|
||| || |||||||||| || || ||||||||||| ||||||| |
|
|
| T |
40209016 |
ccttgacatagccaatgttgccatagttatccacctcattggtgc |
40209060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 40201271 - 40201414
Alignment:
| Q |
49 |
acaaccattttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtcctggaaaccttctaaccggtttcggtttctataatcctt |
148 |
Q |
| |
|
||||| |||||||||||| | || || ||||| ||||| || || |||||| | |||||||||||||||||| |||||||||| ||||||||||| || | |
|
|
| T |
40201271 |
acaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccat |
40201370 |
T |
|
| Q |
149 |
tctggctcctcgatatagccaatgccgcaattgttatccacctt |
192 |
Q |
| |
|
| |||||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
40201371 |
tttggctccttgacatagccaatgctgccatagttatccacctt |
40201414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 40204870 - 40205014
Alignment:
| Q |
56 |
ttttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtcctggaaaccttctaaccggtttcggtttctataatcctttctggct |
155 |
Q |
| |
|
||||||||||| | || || ||||| ||||| || || |||||| | |||||||||||||||||| |||||||||| ||||||||||| || || ||||| |
|
|
| T |
40204870 |
ttttctacatgctttgcggctgttttggatatgctgcgtttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccattttggct |
40204969 |
T |
|
| Q |
156 |
cctcgatatagccaatgccgcaattgttatccaccttgttggtgc |
200 |
Q |
| |
|
||| || ||||||||||| || || ||||||||||| ||||||| |
|
|
| T |
40204970 |
ccttgacatagccaatgctgccatagttatccacctcattggtgc |
40205014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 413
Target Start/End: Original strand, 40209186 - 40209270
Alignment:
| Q |
329 |
tcaacctctttagattggtttggaggtcaatctttgtgatcataacaactgtaatatcaatgcttctaccattcttcaatgacat |
413 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||| || |||||||| | |||||||||| || ||||| ||||||||||| |
|
|
| T |
40209186 |
tcaacctatttagattggtttggaggacaatttttgtaatattaacaactttggtatcaatgctccttccatttttcaatgacat |
40209270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 40201548 - 40201629
Alignment:
| Q |
329 |
tcaacctctttagattggtttggaggtcaatctttgtgatcataacaactgtaatatcaatgcttctaccattcttcaatga |
410 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||| || || ||||| | || ||||||| || |||||||||||||| |
|
|
| T |
40201548 |
tcaacctatttagattggtttggaggacaatttttgtaatattatcaactttggtagcaatgctccttccattcttcaatga |
40201629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 418
Target Start/End: Original strand, 40205140 - 40205229
Alignment:
| Q |
329 |
tcaacctctttagattggtttggaggtcaatctttgtgatcataacaactgtaatatcaatgcttctaccattcttcaatgacatcgttg |
418 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| ||||| || |||||||| | |||| ||||| || ||||| ||||||||||| |||| |
|
|
| T |
40205140 |
tcaacctatttaggttggtttggaggacaatttttgtaatattaacaactttggtatctatgctccttccatttttcaatgacatagttg |
40205229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University