View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_high_12 (Length: 329)
Name: NF19575_high_12
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 44105503 - 44105211
Alignment:
| Q |
7 |
tcgaataatatatatactaaagtacttgacctttttaatacttaaatagaacctaatatatgttgaaat--ttatcttcagcttattgtgcgagacggaa |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
44105503 |
tcgaatgatatatatactaaagtacttgacctttttaatacttaaatagaacctaatatatgttaaaatgcttatcttcagcttattgtgcgagacggaa |
44105404 |
T |
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| Q |
105 |
acagaaggctaatgcaagacataggtaagccaaaaagataaaactcaaaaagctaattagtatctaactaacatattaagatttttaaagactaaactta |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44105403 |
acagaaggctaatgcaagacataggtaagccaaaaagataaaactaaaa----------gtatctaactaacatattaagatttttaaagactaaactta |
44105314 |
T |
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| Q |
205 |
attaatttctcataatcaattttgcgcagactgtggagggctgtgcaggtcaaggtgcagtgtgcattcaaggccaaatttgtgcaagagggcatgtggg |
304 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44105313 |
att----tctcataatcaattttgcgcagactgtggagggctgtgcaggtcaaggtgcagtgtgcattcaaggccaaatttgtgcaagagggcatgtggg |
44105218 |
T |
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