View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_high_18 (Length: 256)
Name: NF19575_high_18
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 3923733 - 3923503
Alignment:
| Q |
18 |
ccaagttggtttagggaagagtttttgtttgagaactagtttttctaaggaaaagagcgcgaaaccgttttggaatgaggatttgatgtttgttacacaa |
117 |
Q |
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| T |
3923733 |
ccaagttggtttagggaagagtttttgtttgagaactagtttttctaaggaaaagagcgcgaaaccgttttggaatgaggatttgatgtttgttacacaa |
3923634 |
T |
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| Q |
118 |
gagcctttcgatgaagaacttgtcttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttgggtacatatacaactaatttgaataatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923633 |
gagcctttcgatgaagaacttgtcttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttgggtacatatacaactaatttgaataatt |
3923534 |
T |
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| Q |
218 |
cgaacgatgtggatttaagatttgatgatgt |
248 |
Q |
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|||||||||||||| |||||||||||||||| |
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| T |
3923533 |
cgaacgatgtggatataagatttgatgatgt |
3923503 |
T |
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