View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_high_4 (Length: 451)
Name: NF19575_high_4
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 9164015 - 9163743
Alignment:
| Q |
18 |
agtgaaaatagaaaatgttttcacaaagtaaacggacccttccttagaaagcagannnnnnnaaaaccaaaggccatgctgctttgttgggatattgttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9164015 |
agtgaaaatagaaaatgttttcacaaagtaaacggacccttccttagaaagcagatttctttaaaaccaaaggccatgctgctttgttgggatattgttt |
9163916 |
T |
|
| Q |
118 |
tttgaaatgatttggacaacaattctcctgatttaacatgggagcactttccagtcttgagaaccaaatattgtgacatccttcatattatgattctaaa |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9163915 |
tttgaaatgatttggacaacaattctcctgatttaacatggtagcactttccagtcttgagaaccaaatattgtgacatccttcatattatgattccaaa |
9163816 |
T |
|
| Q |
218 |
ggataaactaagatactctaaaataatattaaaaatatttatgagatatttagtatattttaacaccatacaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9163815 |
ggataaactaagatactctaaaataatattaaaaatatttatgagatatttagtatattttaacaccatacaa |
9163743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 9163536 - 9163476
Alignment:
| Q |
379 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattatttt |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9163536 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattatttt |
9163476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 9151024 - 9150955
Alignment:
| Q |
206 |
tatgattctaaaggataaactaagatactctaaaataatattaaaaatatttatgagatatttagtatatt |
276 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||| |
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|
| T |
9151024 |
tatgattctaaaagataaactaagatactctaatataaaattaaaaata-ttatgagatatttaatatatt |
9150955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 9150898 - 9150840
Alignment:
| Q |
381 |
aaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattatttt |
439 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||||| ||||| ||||||||||| |
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| T |
9150898 |
aaataacttaatttttagagcgttttcctattgctgttgttaaaattcttcattatttt |
9150840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 9163587 - 9163557
Alignment:
| Q |
334 |
ttatcattcaacatattttaaacaaaacttg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
9163587 |
ttatcattcaacatattttaaacaaaacttg |
9163557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 15118653 - 15118616
Alignment:
| Q |
20 |
tgaaaatagaaaatgttttcacaaagtaaacggaccct |
57 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |
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|
| T |
15118653 |
tgaaaacacaaaatgttttcacaaagtaaacggaccct |
15118616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 15118828 - 15118865
Alignment:
| Q |
21 |
gaaaatagaaaatgttttcacaaagtaaacggaccctt |
58 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |
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| T |
15118828 |
gaaaatagaatatgttttcacaaagtaaacgggccctt |
15118865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41978374 - 41978411
Alignment:
| Q |
20 |
tgaaaatagaaaatgttttcacaaagtaaacggaccct |
57 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| |
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| T |
41978374 |
tgaaaatagaaaatgttttaacaaagtaaacgaaccct |
41978411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16585358 - 16585390
Alignment:
| Q |
20 |
tgaaaatagaaaatgttttcacaaagtaaacgg |
52 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
16585358 |
tgaaaataaaaaatgttttcacaaagtaaacgg |
16585390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 11229110 - 11229081
Alignment:
| Q |
20 |
tgaaaatagaaaatgttttcacaaagtaaa |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
11229110 |
tgaaaatagaaaatgttttcacaaagtaaa |
11229081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 31686715 - 31686686
Alignment:
| Q |
22 |
aaaatagaaaatgttttcacaaagtaaacg |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
31686715 |
aaaatagaaaatgttttcacaaagtaaacg |
31686686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 33763712 - 33763740
Alignment:
| Q |
22 |
aaaatagaaaatgttttcacaaagtaaac |
50 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
33763712 |
aaaatagaaaatgttttcacaaagtaaac |
33763740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 48411284 - 48411256
Alignment:
| Q |
20 |
tgaaaatagaaaatgttttcacaaagtaa |
48 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
48411284 |
tgaaaatagaaaatgttttcacaaagtaa |
48411256 |
T |
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