View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_high_5 (Length: 443)
Name: NF19575_high_5
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 50557238 - 50557662
Alignment:
| Q |
1 |
gacaaatgtttatcatgaggatttacagtatacaaataaaaagttgcttaac-taacattaaaatnnnnnnnngtggcataatattaactcaaaagatca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |||||| ||||||||||||||||||||||||||| |
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| T |
50557238 |
gacaaatgtttatcatgaggatttacagtatacaaataaaaatttgcttaacattaaaataaaataaaaaa--gtggcataatattaactcaaaagatca |
50557335 |
T |
|
| Q |
100 |
atcattt-aaaaaagaataccgataattcataattctggctagtgattactggaaacaatattaaaaagcttaaacattaaaatttgctgaagatggaag |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50557336 |
atcattttaaaaaagaataccgataattcataattctggctagtgaatactggaaacaatattaaaaagcttaaacattaaaatttgctgaagatggaag |
50557435 |
T |
|
| Q |
199 |
acatgttgaaagagaatgcaggcagagtacaattgcaggcaaagtattattgacgattagaggagtaatattcaccgatacttcagtttttatattttaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50557436 |
acatgttgaaagagaatgcaggcagagtacaattgcaggcaaagtattattggcgattagaggagtaatattcaccgatacttcagtttttatattttaa |
50557535 |
T |
|
| Q |
299 |
aaatagaacaagaaaaaccataaagttgactttttcctgcttttgcagctacatctgatatgacaaaaatgaaatagcagccactattacccgattgcaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
50557536 |
aaatagaacaagaaaaaccataaagttgactttttcctgcttttgcagctacatctgatatgacaaaaatgaaatagcagccactattacccaactgcga |
50557635 |
T |
|
| Q |
399 |
aactaggatagtgtcgcagttttcaaa |
425 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
50557636 |
aactaggatagtgtcgcagttttcaaa |
50557662 |
T |
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