View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_high_7 (Length: 417)
Name: NF19575_high_7
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 3766891 - 3766503
Alignment:
| Q |
12 |
aaagggctgaattagagaaaagaaaggagaagtttgatatcattgttggagatttggctgacccacttgaagatggtccttgctatcagctctacactaa |
111 |
Q |
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| T |
3766891 |
aaagggctgaattagagaaaagaaaggagaagtttgatatcattgttggagatttggctgacccacttgaagatggtccttgctatcagctctacactaa |
3766792 |
T |
|
| Q |
112 |
gtccttctatgagaaagttgtgaagcctaaacttactgagaatggcatttttgtgacccaggtatacttttgaagaacacacttttatgttagacagttg |
211 |
Q |
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| T |
3766791 |
gtccttctatgagaaagttgtgaagcctaaactcactgagaatggcatttttgtgacccaggtatacttttgaagaacacacttttatgttagacagttg |
3766692 |
T |
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| Q |
212 |
ttcaataagatcctgaatttcgctctcgagtagatcgcaactcctgatcgactgtttttgtgtaaaatccgattgagttgtaactctcgattggttttct |
311 |
Q |
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| T |
3766691 |
ttcaataagctcctgaatttcgctctcgagtagatcgcaactcctgatcgactgtttttgtgtaaaatccgattgagttgtaactctcgattggttttct |
3766592 |
T |
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| Q |
312 |
ttttctagtcaagtgagcaattttaaagaatctattaaacaaccatatttttgttacgaagtatttctcactgtccatttaatcaatat |
400 |
Q |
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| T |
3766591 |
ttttccagtcaagtgagcaattttaaataatctattgaacaaccatatttttgttacgaagtatttctcactgcccatttaatcaatat |
3766503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 48389412 - 48389249
Alignment:
| Q |
14 |
agggctgaattagagaaaagaaaggagaagtttgatatcattgttggagatttggctgacccacttgaagatggtccttgctatcagctctacactaagt |
113 |
Q |
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|||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||| || || || || | |
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| T |
48389412 |
agggctgagttagagaaaaggaaagagaaatttgatatcattgttggagatttggcagacccagttgaaggtggaccttgttatcaactttatacaaaat |
48389313 |
T |
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| Q |
114 |
ccttctatgagaaagttgtgaagcctaaacttactgagaatggcatttttgtgacccaggtata |
177 |
Q |
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| T |
48389312 |
cgttctatgaaaatattctgaaacccaagctcaatgagaatgacatttttgtgactcaggtata |
48389249 |
T |
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