View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_1 (Length: 542)
Name: NF19575_low_1
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 40288938 - 40289248
Alignment:
| Q |
1 |
caactgggtgagaattgagtaatttatttccctgtatgagcaagctaaacacaccttgttttctgggtagactttctccttataccaagcaggcctatct |
100 |
Q |
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| T |
40288938 |
caactgggtgagaattgagtaatttatttccctgtatgagcaagttaaacacaccttgttttctgggtagactttctccttataccaagcaggcctatct |
40289037 |
T |
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| Q |
101 |
tgaaggttaatagaaaccaatttgattttatcttgtagtccctgcattggtcatcaaatgaaaaataatgacctattaatcatagaataaaacaattaac |
200 |
Q |
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| T |
40289038 |
tgaaggttaatagaaaccaatttgattttatcttgtagtccctgcattggtcatcaaatgaaaaataatgacctattaatcatagaataaaaaaattaac |
40289137 |
T |
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| Q |
201 |
agattaatagaaattaagaagttcattagcttgaaccaatctaataaaccttgagaaaaccaaaacaattaagttagtaattcaaatatatatgcaccta |
300 |
Q |
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| T |
40289138 |
agattaatagaaattaagaagttcattagcttgaaccaatctaataaaccttgagaaaaccaaaacaattaagttagtaattcaaatatatatgcaccta |
40289237 |
T |
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| Q |
301 |
accaaatcaac |
311 |
Q |
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| T |
40289238 |
accaaatcaac |
40289248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 376 - 523
Target Start/End: Original strand, 40289303 - 40289451
Alignment:
| Q |
376 |
agcttcagttgagttttttatttatcaatatcaaaagtaaaa-caaatagatttgtgtatttgtgcaaaatataaaacaataaacaaagaggagcaagac |
474 |
Q |
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| T |
40289303 |
agcttcagttgagttttttatttatcaatatcaaaagtaaaaacaaatagatttgtgtatttgtgcaaaatataaaacaataaacaaagaggagcaagac |
40289402 |
T |
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| Q |
475 |
aagaaaagacaaaccttatagtttctagcgatccatgcacgttgtgcgt |
523 |
Q |
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| T |
40289403 |
aagaaaagacaaaccttatagtttctagcgatccatgcacgttgtgcgt |
40289451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 28910424 - 28910515
Alignment:
| Q |
53 |
accttgttttctgggtagactttctccttataccaagcaggcctatcttgaaggttaatagaaaccaatttgattttatcttgtagtccctg |
144 |
Q |
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| T |
28910424 |
accttattttcagggtatactttttccttataccaagcaggtctgttttgaaggtcaaaaggaaccagttggatttggtcttgtagtccctg |
28910515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 28922937 - 28923004
Alignment:
| Q |
53 |
accttgttttctgggtagactttctccttataccaagcaggcctatcttgaaggttaatagaaaccaa |
120 |
Q |
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| T |
28922937 |
accttattttcaggatatactttttccttgtaccaagcaggcctattttgaaggtcaataggaaccaa |
28923004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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