View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_10 (Length: 380)
Name: NF19575_low_10
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 9168326 - 9167975
Alignment:
| Q |
9 |
gattattctaggccggagcatgtagtatacttgaactgtaacaagcaactgaagaacgatcctatgtatttggatacatctacgtgtagactgaactccg |
108 |
Q |
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| T |
9168326 |
gattattctaggccggagcatgtagtatacttgaactgtagcaagcaactgaagaacgatcctatgtatgtggatacatctacgtgtagactgaactccg |
9168227 |
T |
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| Q |
109 |
aaaataacagctatatttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagc |
208 |
Q |
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| T |
9168226 |
aaaataacagctatatttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagc |
9168127 |
T |
|
| Q |
209 |
ttttatctccaagaaagattttcaacatttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaa |
308 |
Q |
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| T |
9168126 |
ttttatctccaagaaagattttcaacctttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaa |
9168027 |
T |
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| Q |
309 |
gattcttgtgacatgaaccaacaaaactgctacatgaattacgacagcggag |
360 |
Q |
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| T |
9168026 |
gattcttgtgacatgaaccaacaaaactgctacatgaattacgacagcggag |
9167975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 350
Target Start/End: Original strand, 9307086 - 9307412
Alignment:
| Q |
24 |
gagcatgtagtatacttgaactgtaacaagcaactgaagaacgatcctatgtatttggatacatctacgtgtagactgaactccgaaaataacagctata |
123 |
Q |
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| T |
9307086 |
gagcacgtaatatacttgaactgtagcaatcaagtgaagaacgatcctctgtacgtggatacatctccgtgtagaatcaactctgcaaataacagctatg |
9307185 |
T |
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| Q |
124 |
tttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaa |
223 |
Q |
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|||||||||||| | |||||||||| |||| | |||| |||||||||||||| |||||| |||||||||| ||||||||| |||||| ||| || | |
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| T |
9307186 |
tttatgcaattgatagggactttagtgttggtgaattaaatgttggttgccgtgtgaagattgttactatatcatcagctccagctttaatcgtcaccga |
9307285 |
T |
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| Q |
224 |
agattttcaacatttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatg |
323 |
Q |
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| T |
9307286 |
gggaagacaaccttttccgtacaaggaaattcatagacttctaagctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgacaat |
9307385 |
T |
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| Q |
324 |
aaccaacaaaactgctacatgaattac |
350 |
Q |
| |
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||| | |||||||||| |||| ||||| |
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| T |
9307386 |
aacaatcaaaactgcttcatggattac |
9307412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 320
Target Start/End: Original strand, 9475678 - 9475842
Alignment:
| Q |
156 |
aaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaaagattttcaacatttttcatatgtggaaattc |
255 |
Q |
| |
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||||| ||| ||| ||||| ||||||||||||| |||||||| ||||| ||||||||||| || ||| || |||||||| || | |||||||| |
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| T |
9475678 |
aaattaaatattgattgccacgtgaagcttgttgctatgtcagcagctcctgcttttatctctcggagtgatcaacaccatttttcttacgcggaaattc |
9475777 |
T |
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| Q |
256 |
atcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgac |
320 |
Q |
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| || | |||||||||||||||||| |||||||||| | || |||||||||||| ||||||| |
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| T |
9475778 |
acggaatgctaagctatggatttgaaatttcgtggattacacgtgcttgtgaagatttttgtgac |
9475842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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