View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_14 (Length: 323)
Name: NF19575_low_14
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_14 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 1775970 - 1776066
Alignment:
| Q |
212 |
tctcctctcccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaatt |
308 |
Q |
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| T |
1775970 |
tctcctctcccacacatgttgtatattgttgtgtccagcccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaatt |
1776066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 1775727 - 1775836
Alignment:
| Q |
10 |
aatatccttgaatacaaaaatgattaattctagatttgannnnnnnnnnnnaattttgaatagcttaaataattaaattaagnnnnnnnggttcaaaata |
109 |
Q |
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| T |
1775727 |
aatatccttgaata-aaaaatgattaattctagatttgatttttttttta-aatgttgaatagcttaaataattaaattaagtttttttggttcaaaata |
1775824 |
T |
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| Q |
110 |
gttagattcatc |
121 |
Q |
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| T |
1775825 |
gttagattcatc |
1775836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 1775894 - 1775929
Alignment:
| Q |
179 |
gaagcgaacatctttccctttcttagtttcttatct |
214 |
Q |
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| T |
1775894 |
gaagcgaacatctttccctttcttagtttcttatct |
1775929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 51047823 - 51047727
Alignment:
| Q |
212 |
tctcctctcccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttcagggtcagaatt |
308 |
Q |
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| T |
51047823 |
tctcctctcccacacatgttgtatattgttgtccccagcccccatagttgtaacaaattaaattgtggctttaaacttgaatttcagggtcataatt |
51047727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 51047899 - 51047861
Alignment:
| Q |
179 |
gaagcgaacatctttccctttcttagtttcttatctcct |
217 |
Q |
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| T |
51047899 |
gaagcgaacatctttccctttcttagtttcttatctcct |
51047861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 51048067 - 51048029
Alignment:
| Q |
10 |
aatatccttgaatacaaaaatgattaattctagatttga |
48 |
Q |
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| T |
51048067 |
aatatccttgagtacaaaaatgattaattctagatttga |
51048029 |
T |
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Target: scaffold0031 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 106623 - 106707
Alignment:
| Q |
212 |
tctcctctcccacacatgttgtatattgttgtgcccagtccccatagcagtaacgaattaaattgtggctttaaacttgaatttca |
297 |
Q |
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|||| ||||||||||||||||||||| ||||| || || |||||| ||| ||||||||||||| | |||||||||||||||||||| |
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| T |
106623 |
tctcttctcccacacatgttgtatatcgttgtcccaag-ccccatggcattaacgaattaaatgggggctttaaacttgaatttca |
106707 |
T |
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