View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_16 (Length: 282)
Name: NF19575_low_16
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 45939400 - 45939664
Alignment:
| Q |
1 |
atgaaattttgttattatttgaagtgaagagtgaccattctcccaggtatacaccagaagccatggaaaattttgcagacacaattagatcattagccaa |
100 |
Q |
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| T |
45939400 |
atgaaattttgttattatttgaagtgaagagtgaccattctcccaggtttacaccagaagccatggaaatttttgcagacacaattagatcattagccaa |
45939499 |
T |
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| Q |
101 |
tccaattctcaaaggaggggtcatgcttgaaaagattttgggaccaaaatccacaggtcacctagaactcctaacaacaaaccctaatgacaatccatca |
200 |
Q |
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| T |
45939500 |
tccaattctcaaaggaggggtcatgcttgaaaagattttgggaccaaaatccacaggtcacctagaactcctaacaacaaaccctaatgacaatccatca |
45939599 |
T |
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| Q |
201 |
gttaccttcaattacttcaaagatccagaagatttgagaatgtgtgtggaaagcatgaaaacaat |
265 |
Q |
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| T |
45939600 |
gttaccttcaattacttcaaagatccagaagatttgagaatgtatgtggaaagcatgaaaacaat |
45939664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 265
Target Start/End: Original strand, 45946540 - 45946758
Alignment:
| Q |
53 |
accagaagccatggaaaattttgcagacacaattagatcattagccaatccaattctcaaa------ggaggggtcatgcttgaaaagattttgggacca |
146 |
Q |
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| T |
45946540 |
accagaaactatggaaagttttgcagacataattagatcattaaccaatccaattttcaaattcaaaggaggaatgatagttgaaaaggtaatgggacca |
45946639 |
T |
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| Q |
147 |
aaatccacaggtcacctagaactcctaacaacaaaccctaatgacaatccatcagttaccttcaattacttcaaagatccagaagatttgagaatgtgtg |
246 |
Q |
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| T |
45946640 |
cgatccacaggtcacctggaacttctaacaactaatcccaatgataatccatcagttaccttcaactatttcaaggatccagaagacttgagaatgtgtg |
45946739 |
T |
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| Q |
247 |
tggaaagcatgaaaacaat |
265 |
Q |
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| T |
45946740 |
tggaaggcatgaaaacaat |
45946758 |
T |
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