View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19575_low_18 (Length: 265)

Name: NF19575_low_18
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19575_low_18
NF19575_low_18
[»] chr6 (6 HSPs)
chr6 (160-265)||(11308221-11308328)
chr6 (11-86)||(11308445-11308520)
chr6 (163-218)||(11314008-11314063)
chr6 (131-161)||(11308370-11308400)
chr6 (169-215)||(11589355-11589401)
chr6 (173-218)||(607830-607875)
[»] chr5 (3 HSPs)
chr5 (169-225)||(19986878-19986934)
chr5 (169-212)||(2807991-2808034)
chr5 (171-215)||(3959690-3959734)
[»] chr3 (7 HSPs)
chr3 (169-228)||(43020020-43020079)
chr3 (169-213)||(43021651-43021695)
chr3 (169-228)||(37521841-37521900)
chr3 (169-224)||(8237726-8237781)
chr3 (163-218)||(8993660-8993715)
chr3 (169-228)||(24515987-24516046)
chr3 (169-216)||(36656897-36656944)
[»] chr1 (8 HSPs)
chr1 (169-228)||(10765748-10765807)
chr1 (163-228)||(5493263-5493328)
chr1 (169-229)||(3346028-3346088)
chr1 (169-228)||(5494131-5494191)
chr1 (154-213)||(12214989-12215049)
chr1 (169-213)||(38832845-38832889)
chr1 (170-213)||(14230477-14230520)
chr1 (163-228)||(5489564-5489629)
[»] chr4 (5 HSPs)
chr4 (169-218)||(2215691-2215740)
chr4 (169-213)||(30925380-30925424)
chr4 (169-228)||(35603202-35603262)
chr4 (163-213)||(30926008-30926058)
chr4 (169-228)||(24549965-24550025)
[»] chr7 (1 HSPs)
chr7 (169-213)||(43071726-43071770)
[»] chr2 (4 HSPs)
chr2 (169-225)||(38564615-38564671)
chr2 (177-228)||(27530233-27530284)
chr2 (168-223)||(44021780-44021835)
chr2 (177-213)||(34061324-34061360)
[»] chr8 (3 HSPs)
chr8 (169-228)||(4047529-4047588)
chr8 (163-228)||(41829481-41829547)
chr8 (169-213)||(24409222-24409266)
[»] scaffold0443 (1 HSPs)
scaffold0443 (182-228)||(6564-6610)
[»] scaffold0486 (1 HSPs)
scaffold0486 (169-218)||(1519-1568)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 11308328 - 11308221
Alignment:
Q  160 ggggtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatat--atatttaatctctcttttcgaacaaaatcaagt 257  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  11308328 ggggtagatttgctaacttactccttcgtgtttttaagtgggagtaagttagcaaccccttatatatatatttaatctctcttttcgaacaaaatcaagt 11308229  T
Q  258 agtttcat 265  Q
    | ||||||    
T  11308228 aatttcat 11308221  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 11308520 - 11308445
Alignment:
Q  11 agaatattccacaaaacaacgagaaaacgaaaacataagaacgggaaacggtgtcgtgggaagcagcaacaacatt 86  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308520 agaaaattccacaaaacaacgagaaaacgaaaacataagaacgggaaacggtgtcgtgggaagcagcaacaacatt 11308445  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 11314008 - 11314063
Alignment:
Q  163 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 218  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  11314008 gtagacttgctaacttactctttcatatttttaggtgagagtaagttagcaacccc 11314063  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 11308400 - 11308370
Alignment:
Q  131 ttacaattatgttcattcattaaactagtgg 161  Q
    |||||||||||||||||||||||||||||||    
T  11308400 ttacaattatgttcattcattaaactagtgg 11308370  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 11589355 - 11589401
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaac 215  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  11589355 ttgctaacttactccttcatgtttttaggtgggagtaagttaacaac 11589401  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 607875 - 607830
Alignment:
Q  173 taacttactccttcatatttttaagtgagagtaagttagcaacccc 218  Q
    |||||||||| ||||  |||||| ||||||||||||||||||||||    
T  607875 taacttactctttcacgtttttaggtgagagtaagttagcaacccc 607830  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 19986878 - 19986934
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatata 225  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||    
T  19986878 ttgctaacttactccttcatgtttttaggtgggagtaagttagcaaccccctatata 19986934  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 2808034 - 2807991
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagc 212  Q
    |||||||||||||||||| | |||||| ||||||||||||||||    
T  2808034 ttgctaacttactccttcgtgtttttaggtgagagtaagttagc 2807991  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 3959690 - 3959734
Alignment:
Q  171 gctaacttactccttcatatttttaagtgagagtaagttagcaac 215  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||    
T  3959690 gctaacttactccttcatgttttttggtgggagtaagttagcaac 3959734  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 43020079 - 43020020
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||    
T  43020079 ttgctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 43020020  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 43021651 - 43021695
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  43021651 ttgctaacttactccttcatgtttttaagtgggagtaagttagca 43021695  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 37521900 - 37521841
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    |||||||||||||||||||| |||||  ||| ||||||||||||| |||| |||||||||    
T  37521900 ttgctaacttactccttcatgtttttgggtgggagtaagttagcagccccatatatatat 37521841  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 8237781 - 8237726
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatat 224  Q
    ||||||||||| ||||||||||||||| ||| |||||||||| || |||| |||||    
T  8237781 ttgctaacttattccttcatatttttaggtgggagtaagttaacagccccctatat 8237726  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 8993715 - 8993660
Alignment:
Q  163 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 218  Q
    ||||| ||||||||||||||||||||  ||||   |||||||||||||||||||||    
T  8993715 gtagacttgctaacttactccttcatgattttggatgagagtaagttagcaacccc 8993660  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 24516046 - 24515987
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    |||||||||  || ||||||||||||  ||| |||||||||||||||||| |||||||||    
T  24516046 ttgctaactcgcttcttcatatttttgggtgtgagtaagttagcaaccccatatatatat 24515987  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 36656897 - 36656944
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacc 216  Q
    ||||||||||||| |||||| |||||| |||||||||||||| |||||    
T  36656897 ttgctaacttacttcttcatgtttttaggtgagagtaagttaacaacc 36656944  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 10765807 - 10765748
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||    
T  10765807 ttgctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 10765748  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 5493328 - 5493263
Alignment:
Q  163 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    ||||| ||||||||||||| ||||||||||||  ||  ||||||||||||| |||| |||||||||    
T  5493328 gtagacttgctaacttactgcttcatatttttgggttggagtaagttagcagccccatatatatat 5493263  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 3346088 - 3346028
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatatt 229  Q
    |||||||||||||||||||| |||||| ||| || |||||||||| |||  ||||||||||    
T  3346088 ttgctaacttactccttcatgtttttaggtgggactaagttagcagccctctatatatatt 3346028  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 5494131 - 5494191
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccct-tatatatat 228  Q
    |||||||||||||||||||| |||||  ||| || |||||||||||||||| |||||||||    
T  5494131 ttgctaacttactccttcatgtttttgggtgggaataagttagcaacccctatatatatat 5494191  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 12215049 - 12214989
Alignment:
Q  154 actagtggg-gtagatttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    ||||||||| ||||| ||||||||||||||| |||| ||||| |||| |||||||||||||    
T  12215049 actagtgggagtagagttgctaacttactccatcatgtttttgagtgggagtaagttagca 12214989  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 38832889 - 38832845
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  38832889 ttgctaacttactccttcatgtttttaggtgggagtaagttagca 38832845  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 14230477 - 14230520
Alignment:
Q  170 tgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||    
T  14230477 tgctaacttactccttcatatttttaattggtagtaagttagca 14230520  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 5489629 - 5489564
Alignment:
Q  163 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    ||||| ||||||||||||||||||||||||||   |  ||||| ||||||| |||| |||||||||    
T  5489629 gtagacttgctaacttactccttcatatttttggattggagtaggttagcagccccctatatatat 5489564  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 2215691 - 2215740
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 218  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  2215691 ttgctagcttactccttcgtatttttaggtgagagtaagttagcaacccc 2215740  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 30925424 - 30925380
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  30925424 ttgctaacttactccttaatatttttaggtgggagtaagttagca 30925380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 35603202 - 35603262
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagc-aaccccttatatatat 228  Q
    |||||||||||||||||||| |||||  ||| |||||||||||| |||||| |||||||||    
T  35603202 ttgctaacttactccttcatgtttttgggtgggagtaagttagcaaaccccatatatatat 35603262  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 30926008 - 30926058
Alignment:
Q  163 gtagatttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    ||||| |||||||||||||||||||| ||||||  || |||||||||||||    
T  30926008 gtagacttgctaacttactccttcatgtttttagatgggagtaagttagca 30926058  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 24549965 - 24550025
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccct-tatatatat 228  Q
    |||||||||||||| ||||| ||||| |||| || |||||||||| ||||| |||||||||    
T  24549965 ttgctaacttactcattcatgtttttgagtgggactaagttagcagcccctatatatatat 24550025  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 43071726 - 43071770
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    |||||||||||||||||||| |||||  |||||||||||||||||    
T  43071726 ttgctaacttactccttcatgtttttgggtgagagtaagttagca 43071770  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 38564615 - 38564671
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatata 225  Q
    |||||||||||||||||||| |||||| |||  |||||||||||| |||| ||||||    
T  38564615 ttgctaacttactccttcatgtttttaggtggaagtaagttagcatccccctatata 38564671  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 27530233 - 27530284
Alignment:
Q  177 ttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    |||||||||||| |||||  ||| |||||||||||||||||| |||||||||    
T  27530233 ttactccttcatgtttttgggtgggagtaagttagcaaccccatatatatat 27530284  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 44021780 - 44021835
Alignment:
Q  168 tttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttata 223  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||| |||| ||||    
T  44021780 tttgctaacttactccttcatatttttaggtgggtgtaagttggcagccccctata 44021835  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 34061360 - 34061324
Alignment:
Q  177 ttactccttcatatttttaagtgagagtaagttagca 213  Q
    |||||||||||||||||| |||| |||||||||||||    
T  34061360 ttactccttcatatttttcagtgtgagtaagttagca 34061324  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 4047588 - 4047529
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    |||||||||| | |||| ||||||||||||||| |||||||| || |||| |||||||||    
T  4047588 ttgctaacttgcaccttaatatttttaagtgagtgtaagttaacagccccatatatatat 4047529  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 41829481 - 41829547
Alignment:
Q  163 gtagatttgctaacttactccttcatattttt-aagtgagagtaagttagcaaccccttatatatat 228  Q
    ||||| |||||||||||||||||||| |||||   ||||||||||||||||| | || |||||||||    
T  41829481 gtagacttgctaacttactccttcatgtttttggggtgagagtaagttagcagctccctatatatat 41829547  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 24409266 - 24409222
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagca 213  Q
    |||||||||||||||||||| |||||  ||| |||||||||||||    
T  24409266 ttgctaacttactccttcatgtttttgggtgggagtaagttagca 24409222  T

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Target: scaffold0443 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 6564 - 6610
Alignment:
Q  182 ccttcatatttttaagtgagagtaagttagcaaccccttatatatat 228  Q
    ||||||| |||||  |||||||||||||||||||||| |||||||||    
T  6564 ccttcatgtttttttgtgagagtaagttagcaaccccctatatatat 6610  T

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Target: scaffold0486 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 1519 - 1568
Alignment:
Q  169 ttgctaacttactccttcatatttttaagtgagagtaagttagcaacccc 218  Q
    |||||||||||||||||||| |||||  ||| |||||||||||| |||||    
T  1519 ttgctaacttactccttcatctttttgggtgcgagtaagttagccacccc 1568  T

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