View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_20 (Length: 248)
Name: NF19575_low_20
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30964893 - 30964649
Alignment:
| Q |
1 |
caataaacctcaataactaagtcttcatgtttgccttaatttgagctggataagcaaggaaacacacagctttgttttattctcttgacattgcatttaa |
100 |
Q |
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| T |
30964893 |
caataaacctcaataactaagtattcatgtttgccttaatttgagctggataagcaaggaaacacacagctttgttttattctcttgacattgcatttaa |
30964794 |
T |
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| Q |
101 |
cacaaacatgcttcttcttgaggttgaattagttcaatcc-nnnnnnnggacgagcatgtcctttgaagtgtgaatatgtttttctatttaaatttccca |
199 |
Q |
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| T |
30964793 |
cacaaacatgcttcttcttgaggttgaattagttcaatcctttttttgggacgggcatgtcctttgaagtgtgaatatgtttttctatttaaatttccca |
30964694 |
T |
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| Q |
200 |
tcaggtaatattgtttgc-tgaagaaaatgaagatgatgatgatg |
243 |
Q |
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| T |
30964693 |
tcaggtaatattgtttgcttgcagaagatgaggatgatgatgatg |
30964649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 30964939 - 30964894
Alignment:
| Q |
3 |
ataaacctcaataactaagtcttcatgtttgccttaatttgagctg |
48 |
Q |
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||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
30964939 |
ataaacctcaacaatcaagtattcatgtttgccttaatttgagctg |
30964894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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