View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_23 (Length: 236)
Name: NF19575_low_23
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 30027347 - 30027194
Alignment:
| Q |
1 |
attaattaattacttttcatcggtctacaaatagtaaactaccgcttcaggaataatagttaactattgttgacacctacgacaactacatattagttac |
100 |
Q |
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| T |
30027347 |
attaattaattacttttcgtcggtctacaaatagtaaactaccgcttcaggaacaatagttaactattgttgacacctacgacaactacatattagttac |
30027248 |
T |
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| Q |
101 |
aaagaaaaaacatgcactgtttcagagtttgagttttttgtgtttgttttggatac |
156 |
Q |
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| T |
30027247 |
agagaaaaaacttgcactgtttcagagtttgag--ttttgtgtttgttttggatac |
30027194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 30042131 - 30042004
Alignment:
| Q |
29 |
aaatagtaaactaccgcttcaggaataatagttaactattgttgacacctacgacaactacatattagttacaaagaaaaaacatgcactgtttcagagt |
128 |
Q |
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| T |
30042131 |
aaataataaattactgcttcaggaacaatagttaactattgttgacacctacgacatctaactattagttacagagaaaaaacttgcactgttttaaagt |
30042032 |
T |
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| Q |
129 |
ttgagttttttgtgtttgttttggatac |
156 |
Q |
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| T |
30042031 |
ttgagttttttatgtttgttttggatac |
30042004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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