View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_24 (Length: 235)
Name: NF19575_low_24
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 7218480 - 7218675
Alignment:
| Q |
19 |
gtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaa |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218480 |
gtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaa |
7218579 |
T |
|
| Q |
119 |
gaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218580 |
gaatttattcaactttacacaattcacatgattcattc--atatatgtacttaataagtgtgaacttacattattatttcttttttgtagtgatggcc |
7218675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 7317583 - 7317403
Alignment:
| Q |
19 |
gtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaa |
118 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||||||||||| |
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| T |
7317583 |
gttttgatgtaatgttgattgatgctcatatgccaaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaa |
7317484 |
T |
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| Q |
119 |
gaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttct |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
7317483 |
gaatttcttcaactttacacaattcacatgattcattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 7243986 - 7244105
Alignment:
| Q |
19 |
gtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaa |
118 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
7243986 |
gtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaa |
7244085 |
T |
|
| Q |
119 |
gaatttattcaactttacac |
138 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
7244086 |
gaatttattcaactttacac |
7244105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 7324367 - 7324256
Alignment:
| Q |
24 |
gatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatt |
123 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| || | ||||||||||||||||||||| ||||||||||||| |
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| T |
7324367 |
gatgtaatgttgattgatgctcatatgccgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatt |
7324268 |
T |
|
| Q |
124 |
tattcaacttta |
135 |
Q |
| |
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| |||||||||| |
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| T |
7324267 |
tcttcaacttta |
7324256 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 8162196 - 8162314
Alignment:
| Q |
19 |
gtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaa |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||| | ||||||| || ||||| |
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| T |
8162196 |
gtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgctatcagtaa |
8162295 |
T |
|
| Q |
119 |
gaatttattcaactttaca |
137 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
8162296 |
gaatttatttaactttaca |
8162314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 7244127 - 7244204
Alignment:
| Q |
141 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
215 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatggc |
7244204 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 7324222 - 7324158
Alignment:
| Q |
151 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
215 |
Q |
| |
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|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||||| |
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| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatggc |
7324158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 8162379 - 8162417
Alignment:
| Q |
177 |
tgtgaacttacattattatttcttttttgtagtgatggc |
215 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||| |
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| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatggc |
8162417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 22766411 - 22766295
Alignment:
| Q |
19 |
gtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaa |
118 |
Q |
| |
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|||| ||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||| || | | |||||||| |||||||| |||||||| |
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| T |
22766411 |
gttttgatgtaatgttaattgatgctcatatgccaaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaa |
22766312 |
T |
|
| Q |
119 |
gaatttattcaacttta |
135 |
Q |
| |
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| |||| |||||||||| |
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| T |
22766311 |
gtatttcttcaacttta |
22766295 |
T |
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