View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19575_low_25 (Length: 233)

Name: NF19575_low_25
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19575_low_25
NF19575_low_25
[»] chr8 (4 HSPs)
chr8 (1-218)||(14191526-14191743)
chr8 (1-218)||(14182586-14182803)
chr8 (2-218)||(40717346-40717562)
chr8 (3-211)||(14200542-14200750)
[»] chr5 (3 HSPs)
chr5 (1-218)||(34645641-34645858)
chr5 (1-201)||(34665335-34665535)
chr5 (3-110)||(19649795-19649902)
[»] chr4 (2 HSPs)
chr4 (1-215)||(1389922-1390135)
chr4 (72-213)||(45644907-45645048)
[»] chr6 (1 HSPs)
chr6 (3-218)||(34302301-34302516)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14191526 - 14191743
Alignment:
Q  1 tgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||    
T  14191526 tgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaataaataccaatattttgtcgatgccgcacgtcgttccatcaac 14191625  T
Q  101 cgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |    
T  14191626 cgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaatccccgatatcggcgagtatctaatgacctattcagttggtacac 14191725  T
Q  201 caccatttaagttatatg 218  Q
    ||||||||||||||||||    
T  14191726 caccatttaagttatatg 14191743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14182586 - 14182803
Alignment:
Q  1 tgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaac 100  Q
    |||||||||||||||||||||||| | |||||||||||| ||  ||||||| |||||||||||||||    |||||||||||||||| ||||| |||||     
T  14182586 tgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaaacaaataccaacatattgtcaatgccgcacgccgttctatcaat 14182685  T
Q  101 cgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccc 200  Q
    |||||||||||||| ||||||  | ||||  |||| | |||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||    
T  14182686 cgtgccaatcatttctacaaaactgccctcacaaacacacctcaatcaactgtaatccccgatcatggcgagtatctcatgacctattcagttggtaccc 14182785  T
Q  201 caccatttaagttatatg 218  Q
    ||||||||||||||||||    
T  14182786 caccatttaagttatatg 14182803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 40717346 - 40717562
Alignment:
Q  2 gttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaacc 101  Q
    |||||||| |||||||||||||||| |||||||||| ||||  ||||||| |||||||| ||||||    |||| ||||||||||||||||| |||||||    
T  40717346 gttgaacttatccaccgcgactcttcaaaatcaccattctaccaacctacacaaaacaagtaccaaaaagttgtgaatgccgcacgtcgttctatcaacc 40717445  T
Q  102 gtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtacccc 201  Q
    |||| |||||||| |||||| |||| ||| ||| |  |||| |||||| |||||| || ||||  || |||||||| |||||||||||| |||||| |||    
T  40717446 gtgctaatcatttctacaaaaattcacttacaagttcacctgaatcaaatgtaatccctgataatggtgagtatctgatgacctattcaattggtagccc 40717545  T
Q  202 accatttaagttatatg 218  Q
    |||||||||||||||||    
T  40717546 accatttaagttatatg 40717562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 14200542 - 14200750
Alignment:
Q  3 ttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccg 102  Q
    ||||||||||||| |||||||||| |||||||||| ||||  ||||||| |||||||||||| ||    ||| |||||| |  |||||||||||||||||    
T  14200542 ttgaactcatccatcgcgactcttcaaaatcaccattctaccaacctacacaaaacaaatacgaacgcattgccaatgcggtgcgtcgttccatcaaccg 14200641  T
Q  103 tgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtacccca 202  Q
    || ||| ||||| ||||||||||| ||  | | || |||||||||||||||||   | ||||  || |||||||||||||  |||||| ||||||| |||    
T  14200642 tgtcaaccatttctacaaatattctctcactagtacacctcaatcaactgtaaactctgataaaggtgagtatctcatgagttattcaattggtactcca 14200741  T
Q  203 ccatttaag 211  Q
    |||||||||    
T  14200742 ccatttaag 14200750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 34645641 - 34645858
Alignment:
Q  1 tgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaac 100  Q
    |||||||||||||||||| |||||   ||||||||||  ||| ||||||||  |||| |||||||||   |||||| |||| |||||||||||||||||     
T  34645641 tgttgaactcatccaccgtgactccccaaaatcaccatactacaaacctaccgaaaataaataccaacactttgtcgatgcagcacgtcgttccatcaat 34645740  T
Q  101 cgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccc 200  Q
    |||||||||||||| |  ||| ||||     ||| || |||| ||||||||||||| |||||||  || |  ||||||||||||||||||||||||||||    
T  34645741 cgtgccaatcatttctttaaagattctgacacaagtacacctgaatcaactgtaatccccgataggggtggttatctcatgacctattcagttggtaccc 34645840  T
Q  201 caccatttaagttatatg 218  Q
    | |||  |||| ||||||    
T  34645841 ctccaactaagatatatg 34645858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 34665335 - 34665535
Alignment:
Q  1 tgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaac 100  Q
    |||||||||||||||||| |||||   ||||||||||  ||| ||||||||  |||| |||||||||   |||||| |||| |||||||||||||||||     
T  34665335 tgttgaactcatccaccgtgactccccaaaatcaccatactacaaacctaccgaaaataaataccaacactttgtcgatgcagcacgtcgttccatcaat 34665434  T
Q  101 cgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccc 200  Q
    |||||||||||||| |  ||| ||||     ||| || |||| ||||||||||||| |||||||  || |  ||||||||||||||||||||||||||||    
T  34665435 cgtgccaatcatttctttaaagattctgacacaagtacacctgaatcaactgtaatccccgataggggtggttatctcatgacctattcagttggtaccc 34665534  T
Q  201 c 201  Q
    |    
T  34665535 c 34665535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 19649902 - 19649795
Alignment:
Q  3 ttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccg 102  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||| | |||||||||| |||     |||||||||| |||||||| |||||||| ||    
T  19649902 ttgaactcatccaccgcgattcttcaaaatcaccactctacaaacctgcacaaaacaaattccagcatgttgtcaatgctgcacgtcggtccatcaatcg 19649803  T
Q  103 tgccaatc 110  Q
    ||||||||    
T  19649802 tgccaatc 19649795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1389922 - 1390135
Alignment:
Q  1 tgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaac 100  Q
    |||||||||||||||||| ||||||| |||||||||||||||  ||||||| ||||| |||||||||  || ||||||||||   | |||||||||  |     
T  1389922 tgttgaactcatccaccgtgactcttcaaaatcaccactctaccaacctacacaaaataaataccaa-cgtgtgtcaatgccatgcatcgttccattgat 1390020  T
Q  101 cgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccc 200  Q
    |||| | ||||||| ||| || |||||||| | || | |||| |||| ||||| || |||| ||  || |||| ||| |||||||||||||| |||||||    
T  1390021 cgtgtcgatcatttctactaacattcccttactaacaaacctaaatccactgtgatccccgctaaaggtgagtttcttatgacctattcagtcggtaccc 1390120  T
Q  201 caccatttaagttat 215  Q
    ||||||| |||||||    
T  1390121 caccattaaagttat 1390135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 45644907 - 45645048
Alignment:
Q  72 ttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcga 171  Q
    |||||||||| |||| |||||||||||  |||| ||||||||| || ||| |||| || |||| || |||| |||||||||| || ||| |||  ||       
T  45644907 ttgtcaatgcagcacatcgttccatcattcgtgtcaatcatttctataaaaattctctcgcaagtacacctgaatcaactgtgatccccaatacaggttc 45645006  T
Q  172 gtatctcatgacctattcagttggtaccccaccatttaagtt 213  Q
     |||||||||| ||||| ||||||||||||||||||||||||    
T  45645007 ttatctcatgaactattgagttggtaccccaccatttaagtt 45645048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 34302301 - 34302516
Alignment:
Q  3 ttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccg 102  Q
    ||||||| || ||||| ||||| | |||||||||  |||| |||||||| |||||||||||||||    ||||| |||| | || |||||| ||||| ||    
T  34302301 ttgaacttatacaccgtgactcctcaaaatcacctttctacaaacctacacaaaacaaataccaacatgttgtcgatgcagtacatcgttcgatcaatcg 34302400  T
Q  103 tgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtacccca 202  Q
    || |||||| | | ||||| |||| ||||||| || |||| |||||||||||||  |  ||   || || ||| |||||| |||||||||||| ||||||    
T  34302401 tgtcaatcactctaacaaaaattctcttgcaagtacacctgaatcaactgtaatctcttatgagggtgattatatcatgagctattcagttggcacccca 34302500  T
Q  203 ccatttaagttatatg 218  Q
    ||| |||||| |||||    
T  34302501 ccaattaagtcatatg 34302516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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