View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_27 (Length: 222)
Name: NF19575_low_27
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11882674 - 11882631
Alignment:
| Q |
1 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
44 |
Q |
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| T |
11882674 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
11882631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11882722 - 11882679
Alignment:
| Q |
1 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
44 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11882722 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
11882679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11891908 - 11891865
Alignment:
| Q |
1 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
44 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11891908 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
11891865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11905519 - 11905476
Alignment:
| Q |
1 |
aggtggcggtgatggtgagggaggtggaggtgatttgtaatagt |
44 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||| |
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| T |
11905519 |
aggtggcggtgatggtgacggtggtggaggtgatttgtaatagt |
11905476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 11882427 - 11882391
Alignment:
| Q |
8 |
ggtgatggtgagggaggtggaggtgatttgtaatagt |
44 |
Q |
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||||||||||| || |||||||||||||||||||||| |
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| T |
11882427 |
ggtgatggtgatggtggtggaggtgatttgtaatagt |
11882391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 11891661 - 11891625
Alignment:
| Q |
8 |
ggtgatggtgagggaggtggaggtgatttgtaatagt |
44 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |
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| T |
11891661 |
ggtgatggtgatggtggtggaggtgatttgtaatagt |
11891625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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