View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19575_low_3 (Length: 465)

Name: NF19575_low_3
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19575_low_3
NF19575_low_3
[»] chr3 (4 HSPs)
chr3 (20-452)||(44478130-44478562)
chr3 (387-427)||(30037975-30038015)
chr3 (192-246)||(34584908-34584962)
chr3 (387-452)||(46240524-46240589)
[»] chr5 (2 HSPs)
chr5 (20-452)||(21975616-21976048)
chr5 (387-427)||(29878555-29878595)
[»] chr6 (3 HSPs)
chr6 (21-241)||(22370815-22371035)
chr6 (381-452)||(24675827-24675898)
chr6 (372-452)||(19395874-19395954)
[»] chr2 (3 HSPs)
chr2 (21-243)||(13649870-13650089)
chr2 (90-242)||(20653593-20653745)
chr2 (372-452)||(22056668-22056748)
[»] chr8 (4 HSPs)
chr8 (21-148)||(41771489-41771616)
chr8 (162-244)||(1379763-1379845)
chr8 (90-247)||(17130025-17130182)
chr8 (387-427)||(3921013-3921053)
[»] chr7 (7 HSPs)
chr7 (21-148)||(47735105-47735232)
chr7 (367-452)||(14798552-14798637)
chr7 (367-452)||(15245544-15245629)
chr7 (367-452)||(14632754-14632839)
chr7 (21-223)||(13048059-13048261)
chr7 (21-241)||(34797383-34797603)
chr7 (162-242)||(37875643-37875723)
[»] chr4 (4 HSPs)
chr4 (21-148)||(35598566-35598693)
chr4 (174-244)||(17323260-17323330)
chr4 (381-452)||(4497019-4497090)
chr4 (387-427)||(6869379-6869419)
[»] chr1 (2 HSPs)
chr1 (367-452)||(26268773-26268858)
chr1 (372-452)||(31812335-31812415)
[»] scaffold0300 (1 HSPs)
scaffold0300 (381-452)||(18433-18504)
[»] scaffold0129 (1 HSPs)
scaffold0129 (372-452)||(786-866)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 44478130 - 44478562
Alignment:
Q  20 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44478130 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattac 44478229  T
Q  120 ccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtct 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44478230 ccattggcttttggagtggttgagaatgagactaatgaagcttggagatggttcttgacattgctacttaatgatattggcactgacaggagatgggtct 44478329  T
Q  220 ttatatcagaccaacaaaaggtaaataatttatgttttgagactaatttgtacttatgttatgttttgctctgtgtacttatgttttgttttgctatgtg 319  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||    
T  44478330 ttataacagaccaacaaaaggtaaatagtttatgttttgagactaatttgtacttatgttttgttatgctgtgtgtacttatgttttcttttgctatgtg 44478429  T
Q  320 tgtactctagggattgattccagttttagaagaatggtctgacagggttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagttt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  44478430 tgtactctagggattgattccagttttagaagaatggtctgacaggcttgaacataggttgtgtttgagacatttatatgctaacttcaagaagaagttt 44478529  T
Q  420 ggaggagggaccttgattagagacttgatgatg 452  Q
    |||||||||||||||||||||||||||||||||    
T  44478530 ggaggagggaccttgattagagacttgatgatg 44478562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 30038015 - 30037975
Alignment:
Q  387 agacatttatatgctaacttcaagaagaagtttggaggagg 427  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  30038015 agacatttgtatgctaatttcaagaagaagtttggaggagg 30037975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 34584908 - 34584962
Alignment:
Q  192 gatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaata 246  Q
    |||||||| ||||| | ||||||||| |||||||| || ||||||||||||||||    
T  34584908 gatattggaactgagaagagatgggtatttatatctgatcaacaaaaggtaaata 34584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 46240524 - 46240589
Alignment:
Q  387 agacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    |||||||| |||||||||||||||||||| ||||| ||||| ||  | || || ||||||||||||    
T  46240524 agacatttgtatgctaacttcaagaagaaatttggtggaggtactcttataagggacttgatgatg 46240589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Complemental strand, 21976048 - 21975616
Alignment:
Q  20 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21976048 atgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgttgttggaagagatgcaaatgatcagtattac 21975949  T
Q  120 ccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtct 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21975948 ccattggcttttggagtggttgagaatgagactaatgaagcttggagatggttcttgacattgctacttaatgatattggcactgacaggagatgggtct 21975849  T
Q  220 ttatatcagaccaacaaaaggtaaataatttatgttttgagactaatttgtacttatgttatgttttgctctgtgtacttatgttttgttttgctatgtg 319  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||    
T  21975848 ttataacagaccaacaaaaggtaaatagtttatgttttgagactaatttgtacttatgttttgttatgctgtgtgtacttatgttttcttttgctatgtg 21975749  T
Q  320 tgtactctagggattgattccagttttagaagaatggtctgacagggttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagttt 419  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21975748 tgtactctagggattgattccagttttagaagaatggtctggcaggcttgaacataggctgtgtttgagacatttatatgctaacttcaagaagaagttt 21975649  T
Q  420 ggaggagggaccttgattagagacttgatgatg 452  Q
    |||||||||||||||||||||||||||||||||    
T  21975648 ggaggagggaccttgattagagacttgatgatg 21975616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 29878555 - 29878595
Alignment:
Q  387 agacatttatatgctaacttcaagaagaagtttggaggagg 427  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  29878555 agacatttgtatgctaatttcaagaagaagtttggaggagg 29878595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 22371035 - 22370815
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||||| ||||| || |||||||| || ||| |||||||    |||||||| ||  || ||||||| || || |||||||||||||| || |||| ||    
T  22371035 tgtaggccattcataggggtggatggttgtcatttgaaaacccaatatggaggtattttattggttgcagtgggtagagatgcaaatgaccaatatttcc 22370936  T
Q  121 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 220  Q
    | |||||||||||||| || |||| |||||| |  ||| ||||||| |||||| | || || || ||| | |||||||| ||| ||||||||||||| ||    
T  22370935 ctttggcttttggagttgtagagactgagacaacagattcttggaggtggttccttaccttactgcttgaagatattggaactaataggagatgggtatt 22370836  T
Q  221 tatatcagaccaacaaaaggt 241  Q
    ||| || ||||||||||||||    
T  22370835 tatctctgaccaacaaaaggt 22370815  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 24675898 - 24675827
Alignment:
Q  381 tgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||||||||| |||| ||||||||||||||| || || |||||||| || ||| ||||||||    
T  24675898 tgtttaagacatttatatgcaaactacaagaagaagtttggtggtggaaccttgataagggacctgatgatg 24675827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 19395874 - 19395954
Alignment:
Q  372 cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | ||||||||| | ||||||    
T  19395874 catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg 19395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 13650089 - 13649870
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||||| || |||||||||||||| || ||  ||||||| | || |||| | ||| || | |||||||||||||||||||||||||| || |||| ||    
T  13650089 tgtaggccatttattggagtggatgggtgtcacttgaaaactaagtttggatgtatattattagttgctgttggaagagatgcaaatgaccaatatttcc 13649990  T
Q  121 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 220  Q
    |||| || |||||||| ||||||||||| || || ||  ||||||| ||||| || || || || ||| | |||||||| |   | |  |||||||| ||    
T  13649989 cattagcatttggagttgttgagaatgaaaccaaagagacttggaggtggtttttaactttactgcttgaagatattggaa---acaaaagatgggtgtt 13649893  T
Q  221 tatatcagaccaacaaaaggtaa 243  Q
    ||| ||||| |||||||||||||    
T  13649892 tatttcagatcaacaaaaggtaa 13649870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 20653593 - 20653745
Alignment:
Q  90 gttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctactta 189  Q
    ||||| || ||||||||||| || |||||||| || |||||||| || |||||    |||| ||| ||  |||||||||||||  ||||| || |||||     
T  20653593 gttggtagggatgcaaatgaccaatattaccctttagcttttggggttgttgaagtggagaataaggaatcttggagatggtttctgacactgttacttg 20653692  T
Q  190 atgatattggcactgataggagatgggtctttatatcagaccaacaaaaggta 242  Q
    | ||||||||  |||||| |||||||||||| || || || ||||||||||||    
T  20653693 aagatattggagctgataagagatgggtcttcatctctgatcaacaaaaggta 20653745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 22056668 - 22056748
Alignment:
Q  372 cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | ||||||||| | ||||||    
T  22056668 catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg 22056748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 41771616 - 41771489
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||||| || |||||||||||||| || ||  ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| ||    
T  41771616 tgtaggccatttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcc 41771517  T
Q  121 cattggcttttggagtggttgagaatga 148  Q
    |||| || |||||||| |||||||||||    
T  41771516 cattagcatttggagttgttgagaatga 41771489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 1379845 - 1379763
Alignment:
Q  162 tggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaa 244  Q
    ||||| ||||| |||||  || ||||| |||||||||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
T  1379845 tggaggtggtttttgaccctgttacttgatgatattggtactgagaagagatgggtctttatttcagatcaacaaaaggtaaa 1379763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 17130182 - 17130025
Alignment:
Q  90 gttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctactta 189  Q
    ||||| || ||||||||||| || |||||||| || |||||||| || |||||    |||| ||| ||  |||||||||||||  | ||| |  |||||     
T  17130182 gttgggagggatgcaaatgaccaatattaccctttagcttttggggtagttgaagtggagaataaggaatcttggagatggtttctaacacttttacttg 17130083  T
Q  190 atgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaataa 247  Q
    | |||||||| ||||||| |||||||||||| || || || |||||||||||| ||||    
T  17130082 aagatattggaactgataagagatgggtcttcatctctgatcaacaaaaggtacataa 17130025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 3921053 - 3921013
Alignment:
Q  387 agacatttatatgctaacttcaagaagaagtttggaggagg 427  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  3921053 agacatttgtatgctaatttcaagaagaagtttggaggagg 3921013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 47735105 - 47735232
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||||| || |||||||||||||| || ||  ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| ||    
T  47735105 tgtaggccatttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcc 47735204  T
Q  121 cattggcttttggagtggttgagaatga 148  Q
    |||| || |||||||| |||||||||||    
T  47735205 cattagcatttggagttgttgagaatga 47735232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 452
Target Start/End: Complemental strand, 14798637 - 14798552
Alignment:
Q  367 ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    |||| |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||||    
T  14798637 ttgaccataggttgtgcttaaggcatttgtatgctaattttaagaagaagtttggaggaggaacattgattagagacttgatgatg 14798552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 452
Target Start/End: Complemental strand, 15245629 - 15245544
Alignment:
Q  367 ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    |||| |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||||    
T  15245629 ttgaccataggttgtgcttaaggcatttgtatgctaattttaagaagaagtttggaggaggaacattgattagagacttgatgatg 15245544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 452
Target Start/End: Original strand, 14632754 - 14632839
Alignment:
Q  367 ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    |||| |||||| |||| || || ||||| |||| ||| || |||||||||||||||||||| || |||||||||||||||||||||    
T  14632754 ttgaccataggttgtgcttaaggcatttgtatgataattttaagaagaagtttggaggaggaacattgattagagacttgatgatg 14632839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 13048261 - 13048059
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||||| ||||| || |||||||| || |||||||||||    |||||||| ||  || ||||||| ||||| |||||||||||||| || || | ||    
T  13048261 tgtaggccattcataggggtggatgggtgtcatctgaaaacccaatatggaggtattttattggttgcagttggtagagatgcaaatgaccaatacttcc 13048162  T
Q  121 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 220  Q
    |  ||||||||||||| || |||| |||||| |   || ||||||| |||||| | || || || ||| | |||||||| ||| | ||||||||||| ||    
T  13048161 ctctggcttttggagttgtagagactgagacaacatattcttggaggtggttccttaccttactgcttgaagatattggaactaacaggagatgggtgtt 13048062  T
Q  221 tat 223  Q
    |||    
T  13048061 tat 13048059  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 34797603 - 34797383
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||| | ||||| || |||||||| || |||||||||||    | |||||| ||  || ||||||| ||||| |||||||||||||| || || |  |    
T  34797603 tgtaggtcattcataggggtggatgggtgtcatctgaaaacccaatttggaggtattttattggttgcagttggtagagatgcaaatgaccaatactttc 34797504  T
Q  121 cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt 220  Q
    | |||||||||||||| || |||| ||| || |  ||| | ||||| |||||| | || || || ||| | |||||||| ||| ||||||||||||| ||    
T  34797503 ctttggcttttggagttgtagagactgaaacaacagattcatggaggtggttccttaccttactgcttgaagatattggaactaataggagatgggtatt 34797404  T
Q  221 tatatcagaccaacaaaaggt 241  Q
    ||| || || |||||||||||    
T  34797403 tatttctgatcaacaaaaggt 34797383  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 37875643 - 37875723
Alignment:
Q  162 tggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggta 242  Q
    |||||||||||||| ||| || ||||| | ||||| || ||||| |||| |||||| || || ||||| ||||||||||||    
T  37875643 tggagatggttcttaacactgttacttgaagatatagggactgagaggaaatgggttttcatttcagatcaacaaaaggta 37875723  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 35598566 - 35598693
Alignment:
Q  21 tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc 120  Q
    |||||||| || |||||||||||||| || ||  ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| ||    
T  35598566 tgtaggccatttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcc 35598665  T
Q  121 cattggcttttggagtggttgagaatga 148  Q
    |||| || |||||||| |||||||||||    
T  35598666 cattagcatttggagttgttgagaatga 35598693  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 17323260 - 17323330
Alignment:
Q  174 ttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaa 244  Q
    ||||| ||| ||||| |||||||||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
T  17323260 ttgaccttgttacttgatgatattggtactgagaagagatgggtctttatttcagatcaacaaaaggtaaa 17323330  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 4497090 - 4497019
Alignment:
Q  381 tgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||||||||| |||||||| ||||||||||| || || |||||||| || ||| ||||||||    
T  4497090 tgtttaagacatttatatgcaaacttcaaaaagaagtttggtggtggaaccttgataagggacctgatgatg 4497019  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 6869379 - 6869419
Alignment:
Q  387 agacatttatatgctaacttcaagaagaagtttggaggagg 427  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  6869379 agacatttgtatgcaaatttcaagaagaagtttggaggagg 6869419  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 452
Target Start/End: Original strand, 26268773 - 26268858
Alignment:
Q  367 ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    |||| |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||||    
T  26268773 ttgaccataggttgtgcttaaggcatttgtatgctaattttaagaagaagtttggaggaggaacattgattagagacttgatgatg 26268858  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 31812335 - 31812415
Alignment:
Q  372 cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | ||||||||| | ||||||    
T  31812335 catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg 31812415  T

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Target: scaffold0300 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 18433 - 18504
Alignment:
Q  381 tgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||||||||| |||| ||||||||||||||| || || |||||||| || ||| ||||||||    
T  18433 tgtttaagacatttatatgcaaactacaagaagaagtttggtggtggaaccttgataagggacctgatgatg 18504  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 786 - 866
Alignment:
Q  372 cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg 452  Q
    ||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | ||||||||| | ||||||    
T  786 catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg 866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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