View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19575_low_4 (Length: 451)

Name: NF19575_low_4
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19575_low_4
NF19575_low_4
[»] chr2 (5 HSPs)
chr2 (18-290)||(9163743-9164015)
chr2 (379-439)||(9163476-9163536)
chr2 (206-276)||(9150955-9151024)
chr2 (381-439)||(9150840-9150898)
chr2 (334-364)||(9163557-9163587)
[»] chr8 (2 HSPs)
chr8 (20-57)||(15118616-15118653)
chr8 (21-58)||(15118828-15118865)
[»] chr5 (2 HSPs)
chr5 (20-57)||(41978374-41978411)
chr5 (20-52)||(16585358-16585390)
[»] chr1 (3 HSPs)
chr1 (20-49)||(11229081-11229110)
chr1 (22-51)||(31686686-31686715)
chr1 (22-50)||(33763712-33763740)
[»] chr7 (1 HSPs)
chr7 (20-48)||(48411256-48411284)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 9164015 - 9163743
Alignment:
Q  18 agtgaaaatagaaaatgttttcacaaagtaaacggacccttccttagaaagcagannnnnnnaaaaccaaaggccatgctgctttgttgggatattgttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  9164015 agtgaaaatagaaaatgttttcacaaagtaaacggacccttccttagaaagcagatttctttaaaaccaaaggccatgctgctttgttgggatattgttt 9163916  T
Q  118 tttgaaatgatttggacaacaattctcctgatttaacatgggagcactttccagtcttgagaaccaaatattgtgacatccttcatattatgattctaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9163915 tttgaaatgatttggacaacaattctcctgatttaacatggtagcactttccagtcttgagaaccaaatattgtgacatccttcatattatgattccaaa 9163816  T
Q  218 ggataaactaagatactctaaaataatattaaaaatatttatgagatatttagtatattttaacaccatacaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163815 ggataaactaagatactctaaaataatattaaaaatatttatgagatatttagtatattttaacaccatacaa 9163743  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 379 - 439
Target Start/End: Complemental strand, 9163536 - 9163476
Alignment:
Q  379 acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattatttt 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163536 acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattatttt 9163476  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 9151024 - 9150955
Alignment:
Q  206 tatgattctaaaggataaactaagatactctaaaataatattaaaaatatttatgagatatttagtatatt 276  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  9151024 tatgattctaaaagataaactaagatactctaatataaaattaaaaata-ttatgagatatttaatatatt 9150955  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 9150898 - 9150840
Alignment:
Q  381 aaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattatttt 439  Q
    |||||||||||||||||||  ||||||||| ||| |||||| ||||| |||||||||||    
T  9150898 aaataacttaatttttagagcgttttcctattgctgttgttaaaattcttcattatttt 9150840  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 9163587 - 9163557
Alignment:
Q  334 ttatcattcaacatattttaaacaaaacttg 364  Q
    |||||||||||||||||||||||||||||||    
T  9163587 ttatcattcaacatattttaaacaaaacttg 9163557  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 15118653 - 15118616
Alignment:
Q  20 tgaaaatagaaaatgttttcacaaagtaaacggaccct 57  Q
    |||||| | |||||||||||||||||||||||||||||    
T  15118653 tgaaaacacaaaatgttttcacaaagtaaacggaccct 15118616  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 15118828 - 15118865
Alignment:
Q  21 gaaaatagaaaatgttttcacaaagtaaacggaccctt 58  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  15118828 gaaaatagaatatgttttcacaaagtaaacgggccctt 15118865  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41978374 - 41978411
Alignment:
Q  20 tgaaaatagaaaatgttttcacaaagtaaacggaccct 57  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  41978374 tgaaaatagaaaatgttttaacaaagtaaacgaaccct 41978411  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16585358 - 16585390
Alignment:
Q  20 tgaaaatagaaaatgttttcacaaagtaaacgg 52  Q
    |||||||| ||||||||||||||||||||||||    
T  16585358 tgaaaataaaaaatgttttcacaaagtaaacgg 16585390  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 11229110 - 11229081
Alignment:
Q  20 tgaaaatagaaaatgttttcacaaagtaaa 49  Q
    ||||||||||||||||||||||||||||||    
T  11229110 tgaaaatagaaaatgttttcacaaagtaaa 11229081  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 31686715 - 31686686
Alignment:
Q  22 aaaatagaaaatgttttcacaaagtaaacg 51  Q
    ||||||||||||||||||||||||||||||    
T  31686715 aaaatagaaaatgttttcacaaagtaaacg 31686686  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 33763712 - 33763740
Alignment:
Q  22 aaaatagaaaatgttttcacaaagtaaac 50  Q
    |||||||||||||||||||||||||||||    
T  33763712 aaaatagaaaatgttttcacaaagtaaac 33763740  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 48411284 - 48411256
Alignment:
Q  20 tgaaaatagaaaatgttttcacaaagtaa 48  Q
    |||||||||||||||||||||||||||||    
T  48411284 tgaaaatagaaaatgttttcacaaagtaa 48411256  T

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