View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_6 (Length: 423)
Name: NF19575_low_6
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 127 - 402
Target Start/End: Original strand, 7652075 - 7652350
Alignment:
| Q |
127 |
aatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga |
226 |
Q |
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| T |
7652075 |
aatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga |
7652174 |
T |
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| Q |
227 |
ggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg |
326 |
Q |
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| T |
7652175 |
ggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg |
7652274 |
T |
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| Q |
327 |
gtggtggcgacggtggaaataatcagagtcagaatcaaggtggaatgccagagggtaaaaatggaaataagaatgt |
402 |
Q |
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| T |
7652275 |
gtggtggcgaaggtggaaataatcagattcagaatcaaggtggaatgccagaaggtaaaaatggaaataagaatgt |
7652350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 7657490 - 7657560
Alignment:
| Q |
135 |
atcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaag |
205 |
Q |
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| T |
7657490 |
atcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctcaaaag |
7657560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7651946 - 7652006
Alignment:
| Q |
1 |
gatgccaccaccaaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagag |
61 |
Q |
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| T |
7651946 |
gatgccaccaccaaatcaaaatccaaatatgaaaggtgttaaggtcaatttgcctaaagag |
7652006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 7657348 - 7657407
Alignment:
| Q |
2 |
atgccaccaccaaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagag |
61 |
Q |
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| T |
7657348 |
atgccaccaccaaatcaaaatacaaatatgaaaggtgttaagttcaatttgcctgaagag |
7657407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 7657639 - 7657695
Alignment:
| Q |
314 |
ggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtgga |
370 |
Q |
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| T |
7657639 |
ggaaagaaaggtggtggtggtggtggcggaaataatcagagtcagaatcaaggtgga |
7657695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 7657725 - 7657763
Alignment:
| Q |
364 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
402 |
Q |
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| T |
7657725 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
7657763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
| Q |
295 |
tggtggaaatgggaatggaggaaagaaaggtggtggtgg |
333 |
Q |
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| T |
48572934 |
tggtggaaatggcaatggaggaaagaaaggtggtggtgg |
48572896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 48538612 - 48538558
Alignment:
| Q |
299 |
ggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcaga |
353 |
Q |
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| T |
48538612 |
ggaaatggcaatggaggaaagaaaggtggcggtggtggtggaggaaataatcaga |
48538558 |
T |
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