View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19575_low_8 (Length: 401)

Name: NF19575_low_8
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19575_low_8
NF19575_low_8
[»] chr6 (9 HSPs)
chr6 (219-388)||(28328888-28329057)
chr6 (219-388)||(28506524-28506693)
chr6 (15-107)||(28329145-28329237)
chr6 (15-107)||(28506781-28506873)
chr6 (219-340)||(28191736-28191857)
chr6 (219-340)||(28525555-28525676)
chr6 (219-340)||(28239710-28239831)
chr6 (219-340)||(28246700-28246821)
chr6 (45-90)||(28239921-28239966)
[»] scaffold0019 (2 HSPs)
scaffold0019 (219-340)||(54950-55071)
scaffold0019 (45-90)||(54785-54830)
[»] scaffold0038 (3 HSPs)
scaffold0038 (219-340)||(39872-39993)
scaffold0038 (219-340)||(46862-46983)
scaffold0038 (45-90)||(40083-40128)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 219 - 388
Target Start/End: Complemental strand, 28329057 - 28328888
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329057 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 28328958  T
Q  319 ctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttc 388  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  28328957 ctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttc 28328888  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 219 - 388
Target Start/End: Complemental strand, 28506693 - 28506524
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28506693 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 28506594  T
Q  319 ctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttc 388  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  28506593 ctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttc 28506524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 28329237 - 28329145
Alignment:
Q  15 agaaatgaaaatcacacatgaccgtttatacaccaacgggtggtcttgtgattggccggaactattatgaatggtgaattcaatatcctccat 107  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28329237 agaaatgaaaatcgcacatgaccatttatacaccaacgggtggtcttgtgattggccggaactattgtgaatggtgaattcaatatcctccat 28329145  T

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Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 28506873 - 28506781
Alignment:
Q  15 agaaatgaaaatcacacatgaccgtttatacaccaacgggtggtcttgtgattggccggaactattatgaatggtgaattcaatatcctccat 107  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28506873 agaaatgaaaatcgcacatgaccatttatacaccaacgggtggtcttgtgattggccggaactattgtgaatggtgaattcaatatcctccat 28506781  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 28191857 - 28191736
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | | |||||||  || ||||    
T  28191857 aaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccactctcggatgttcatatgtaac 28191758  T
Q  319 ctctgcatgaatccattcattt 340  Q
    |||||||||| |||||||||||    
T  28191757 ctctgcatgattccattcattt 28191736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 28525676 - 28525555
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    |||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||   | ||||||| ||| |||     
T  28525676 aaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccactaactgatgttcacatataat 28525577  T
Q  319 ctctgcatgaatccattcattt 340  Q
    |||||||||| |||| ||||||    
T  28525576 ctctgcatgattccagtcattt 28525555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 28239831 - 28239710
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    |||||| |||||||| |||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||| ||      ||||||  || ||||    
T  28239831 aaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttcaaatataac 28239732  T
Q  319 ctctgcatgaatccattcattt 340  Q
    |||||||||| |||||||||||    
T  28239731 ctctgcatgattccattcattt 28239710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 28246821 - 28246700
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    |||||| |||||||| ||| || ||||||||||||| || |||| ||||||||||||||| |||||||| |||||| ||| || ||||||| ||| |||     
T  28246821 aaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacatataat 28246722  T
Q  319 ctctgcatgaatccattcattt 340  Q
    |||||||||| |||| ||||||    
T  28246721 ctctgcatgattccactcattt 28246700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 28239966 - 28239921
Alignment:
Q  45 caccaacgggtggtcttgtgattggccggaactattatgaatggtg 90  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||||    
T  28239966 caccaacgggtggtcttgtgattggcctgaactattctgagtggtg 28239921  T

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Target: scaffold0019 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 54950 - 55071
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    |||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  | ||||||| ||| ||||    
T  54950 aaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacatgtaac 55049  T
Q  319 ctctgcatgaatccattcattt 340  Q
    ||||||||| ||||||||||||    
T  55050 ctctgcatggatccattcattt 55071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 54785 - 54830
Alignment:
Q  45 caccaacgggtggtcttgtgattggccggaactattatgaatggtg 90  Q
    |||||| |||||||||||||||||||| |||||||| |||||||||    
T  54785 caccaatgggtggtcttgtgattggcctgaactattgtgaatggtg 54830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 39993 - 39872
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    |||||| |||||||| |||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||| ||      ||||||  || ||||    
T  39993 aaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttcaaatataac 39894  T
Q  319 ctctgcatgaatccattcattt 340  Q
    |||||||||| |||||||||||    
T  39893 ctctgcatgattccattcattt 39872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 46983 - 46862
Alignment:
Q  219 aaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaac 318  Q
    |||||| |||||||| ||| || ||||||||||||| || |||| ||||||||||||||| |||||||| |||||| ||| || ||||||| ||| |||     
T  46983 aaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacatataat 46884  T
Q  319 ctctgcatgaatccattcattt 340  Q
    |||||||||| |||| ||||||    
T  46883 ctctgcatgattccactcattt 46862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 40128 - 40083
Alignment:
Q  45 caccaacgggtggtcttgtgattggccggaactattatgaatggtg 90  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||||    
T  40128 caccaacgggtggtcttgtgattggcctgaactattctgagtggtg 40083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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