View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19575_low_9 (Length: 401)
Name: NF19575_low_9
Description: NF19575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19575_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 35 - 385
Target Start/End: Original strand, 8003982 - 8004332
Alignment:
| Q |
35 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttct |
134 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8003982 |
gaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattcattactgttct |
8004081 |
T |
|
| Q |
135 |
atttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacatctattcattttaaactaaa |
234 |
Q |
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||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
8004082 |
atttgtgatgatgttgtggcaagacttttggaactatatcactcagctttgttgcgtgtttgtttttcctgctttagacatctattcattttaaactaaa |
8004181 |
T |
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| Q |
235 |
tagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaaca |
334 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8004182 |
tagtatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcagaaca |
8004281 |
T |
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| Q |
335 |
gcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
385 |
Q |
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| T |
8004282 |
gcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
8004332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 36 - 385
Target Start/End: Complemental strand, 7901123 - 7900774
Alignment:
| Q |
36 |
aaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
135 |
Q |
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| T |
7901123 |
aaacttggatttgttgtgattgatctatttatatctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattcattactgttcta |
7901024 |
T |
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| Q |
136 |
tttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacatctattcattttaaactaaat |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901023 |
tttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgtgtgtttgattttgctactttagacatctattcattttaaactaaat |
7900924 |
T |
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| Q |
236 |
agcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacag |
335 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7900923 |
agtatttatagttttttaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacag |
7900824 |
T |
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| Q |
336 |
cgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
385 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
7900823 |
cgtattgtagttgcaaaagtcattaagaggtttattcttcatgcaaagaa |
7900774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 248 - 385
Target Start/End: Original strand, 51518515 - 51518652
Alignment:
| Q |
248 |
tttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgct |
347 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51518515 |
tttctaatcagttgctattgtcctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgttgct |
51518614 |
T |
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| Q |
348 |
gcaaaagtcattaagaggtttattcttcatgcaaagaa |
385 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
51518615 |
gcaaaagtcatcaagaggtttattcttcatgcaaagaa |
51518652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 7904579 - 7904498
Alignment:
| Q |
35 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904579 |
gaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
7904498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 7902954 - 7902873
Alignment:
| Q |
36 |
aaacttgaatttgttgtgattgatctatgtttgtctctttaatgta-tacattttacttcaaacaaaatattaattgaattc |
116 |
Q |
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| T |
7902954 |
aaacttggatttgttgtgattgatctatttatatctctttaatgtaatacattttacttcaaacaaaatattaattgaattc |
7902873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 51518346 - 51518446
Alignment:
| Q |
35 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttct |
134 |
Q |
| |
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|||||||| |||||||||||||| | ||| | | ||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51518346 |
gaaacttggatttgttgtgattgttatatttctatctgttaaatgtatacattttatttcaaacaaaatattaattgaattcacattccattactgttct |
51518445 |
T |
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| Q |
135 |
a |
135 |
Q |
| |
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| |
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| T |
51518446 |
a |
51518446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 132 - 385
Target Start/End: Complemental strand, 1300778 - 1300520
Alignment:
| Q |
132 |
tctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacat------ctattcattt |
225 |
Q |
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|||||||||| ||| || | |||||||||||||||||||||| || ||||||||| || |||| ||||||||||| ||| | ||||| |||| |
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| T |
1300778 |
tctatttgtgctgacgtcatggcaagatttttagaactatatctcttggctttgttgtgtctttg-ttttgctacttgagatgtgcactcctatttattt |
1300680 |
T |
|
| Q |
226 |
taaactaaatagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttga |
325 |
Q |
| |
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|||| |||||| ||||| ||||||||||||| ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1300679 |
caaacgaaatagtatttacagttttctaatcaattgctatcgtcctaccacaacagcctgcagacatttatctgatagatgagccaagtgcatatcttga |
1300580 |
T |
|
| Q |
326 |
ttcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
385 |
Q |
| |
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||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
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| T |
1300579 |
ttccgaacagcgtattattgctgcaaaagttatcaagaggtttattcttcatgcaaagaa |
1300520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 1300855 - 1300798
Alignment:
| Q |
78 |
tgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
135 |
Q |
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||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||| |
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| T |
1300855 |
tgtatacattttatttcaaaataaatattaattgaattcctgatccattacggttcta |
1300798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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