View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_high_12 (Length: 338)

Name: NF19576_high_12
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_high_12
NF19576_high_12
[»] chr1 (7 HSPs)
chr1 (115-217)||(24976665-24976767)
chr1 (115-218)||(51976263-51976366)
chr1 (169-220)||(38618227-38618278)
chr1 (169-217)||(50354996-50355044)
chr1 (168-217)||(29334946-29334995)
chr1 (169-217)||(51610221-51610269)
chr1 (150-187)||(17151031-17151068)
[»] chr2 (6 HSPs)
chr2 (115-218)||(6851911-6852014)
chr2 (116-217)||(26893482-26893583)
chr2 (116-217)||(26898921-26899022)
chr2 (169-217)||(6852809-6852857)
chr2 (169-217)||(26487845-26487893)
chr2 (169-217)||(8536886-8536934)
[»] chr4 (6 HSPs)
chr4 (115-217)||(23574563-23574665)
chr4 (169-217)||(20681722-20681770)
chr4 (169-211)||(53664218-53664260)
chr4 (169-212)||(50710417-50710460)
chr4 (168-217)||(55511902-55511951)
chr4 (177-217)||(53665094-53665134)
[»] chr7 (7 HSPs)
chr7 (163-217)||(5004188-5004242)
chr7 (169-220)||(34852554-34852605)
chr7 (168-211)||(46814246-46814289)
chr7 (168-218)||(42344213-42344263)
chr7 (163-217)||(30916490-30916544)
chr7 (169-217)||(34853334-34853382)
chr7 (176-217)||(42343296-42343337)
[»] chr5 (5 HSPs)
chr5 (163-212)||(18153428-18153477)
chr5 (169-217)||(7495257-7495305)
chr5 (169-217)||(43589162-43589210)
chr5 (168-218)||(32402189-32402239)
chr5 (168-217)||(42993199-42993248)
[»] chr8 (6 HSPs)
chr8 (169-217)||(33802373-33802421)
chr8 (169-218)||(38686302-38686351)
chr8 (168-217)||(42638148-42638197)
chr8 (169-217)||(33801499-33801547)
chr8 (169-212)||(38687055-38687098)
chr8 (169-215)||(32551108-32551154)
[»] chr3 (5 HSPs)
chr3 (168-218)||(35432220-35432270)
chr3 (163-217)||(44406197-44406251)
chr3 (171-217)||(47480507-47480553)
chr3 (168-217)||(7359841-7359890)
chr3 (176-212)||(35431337-35431373)
[»] chr6 (4 HSPs)
chr6 (168-218)||(20687463-20687513)
chr6 (169-217)||(19063660-19063708)
chr6 (176-217)||(20689063-20689104)
chr6 (168-208)||(10606343-10606383)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 24976665 - 24976767
Alignment:
Q  115 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |    
T  24976665 ttgagggtccactataaaagtgtgctctctatttgatctagaggtcaaaaagtgactttcccatggtggaaaagaattcctcctacccaccctaaatgcc 24976764  T
Q  215 acc 217  Q
    |||    
T  24976765 acc 24976767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 51976366 - 51976263
Alignment:
Q  115 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  51976366 ttgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgacttttccatggtggaaaagaattcctcctacccaccctaaatgcc 51976267  T
Q  215 accc 218  Q
    ||||    
T  51976266 accc 51976263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 38618278 - 38618227
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccctc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38618278 actttcccatggtgggaaagaattcctcctacccaccctaaatgccaccctc 38618227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 50354996 - 50355044
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50354996 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 29334946 - 29334995
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  29334946 gactttcccatggtgggaaataattcctcctacccaccctaaatgacacc 29334995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 51610221 - 51610269
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  51610221 actttcccatggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 17151068 - 17151031
Alignment:
Q  150 atctagaggtcaaaaaatgactttcccatggtgggaaa 187  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  17151068 atctagtggtcaaaaaataactttcccatggtgggaaa 17151031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 6852014 - 6851911
Alignment:
Q  115 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |    
T  6852014 ttgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgactttcccatgatgggaaagaattcctcctacccaccctaaatgcc 6851915  T
Q  215 accc 218  Q
    ||||    
T  6851914 accc 6851911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 26893583 - 26893482
Alignment:
Q  116 tgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtca 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||| ||    
T  26893583 tgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgcctttcccatggtgggaaagaattccttctacccaccctaaatgcca 26893484  T
Q  216 cc 217  Q
    ||    
T  26893483 cc 26893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 26899022 - 26898921
Alignment:
Q  116 tgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtca 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||| ||    
T  26899022 tgagggtccactataaaagtgtgctctctatttgatctagaggtcgaaaagtgcctttcccatggtgggaaagaattccttctacccaccctaaatgcca 26898923  T
Q  216 cc 217  Q
    ||    
T  26898922 cc 26898921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 6852809 - 6852857
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  6852809 actttcctatggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 26487845 - 26487893
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  26487845 actttctcatggtaggaaagaattcctcctacccaccctaaatgccacc 26487893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 8536886 - 8536934
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||| ||||    
T  8536886 acttttccatggtaggaaagaattccttctacccaccctaaatgccacc 8536934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 23574563 - 23574665
Alignment:
Q  115 ttgagtgtccactataaaagtgtgctctctatttgatctagaggtcaaaaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtc 214  Q
    ||||| |||||||||||||||||||||| |||||||||||||| || |||| ||||||| ||||||||||||||||||||||||| |||||||||||| |    
T  23574563 ttgagggtccactataaaagtgtgctctttatttgatctagagatcgaaaagtgacttttccatggtgggaaagaattcctcctatccaccctaaatgcc 23574662  T
Q  215 acc 217  Q
    |||    
T  23574663 acc 23574665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 20681770 - 20681722
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  20681770 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 20681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 53664260 - 53664218
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaat 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  53664260 actttcccatggtgggaaagaattccttctacccaccctaaat 53664218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 50710417 - 50710460
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatg 212  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||    
T  50710417 actttcccatggtgggaaagaattccttctacccaccttaaatg 50710460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 55511951 - 55511902
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  55511951 gactttcctatggtgggaaagtattcctcctacctaccctaaatgccacc 55511902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 53665094 - 53665134
Alignment:
Q  177 atggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  53665094 atggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 5004242 - 5004188
Alignment:
Q  163 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  5004242 aaaaagactttcccatggtggaaaagaattcctcctacccatcctaaatgtcacc 5004188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 34852605 - 34852554
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccctc 220  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  34852605 actttcccatggtggaaaagaattccttctacccaccctaaatgccaccctc 34852554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 46814246 - 46814289
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaat 211  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  46814246 gactttcccatggtgggaaagaattcctcctacccatcctaaat 46814289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 42344213 - 42344263
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 218  Q
    |||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  42344213 gacttttctatggtgggaaagaattcctcctacccaccctaaatgccaccc 42344263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 30916490 - 30916544
Alignment:
Q  163 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||| |||||| ||||| ||||||||||||| |||||||||||||||||| ||||    
T  30916490 aaaaagacttttccatgatgggaaagaattcttcctacccaccctaaatgccacc 30916544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 34853334 - 34853382
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||||| ||||||||||||  |||||||||||||||||||||| ||||    
T  34853334 actttcctatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 42343337 - 42343296
Alignment:
Q  176 catggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||| |||||| ||||||||||||||||||||||| ||||    
T  42343337 catggtaggaaagtattcctcctacccaccctaaatgccacc 42343296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 18153428 - 18153477
Alignment:
Q  163 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatg 212  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  18153428 aaaaagactttcccatggtggaaaagaattcctcctacccaccctaaatg 18153477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 7495257 - 7495305
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7495257 actttctcatggtgggaaagaattccccctacccaccctaaatgtcacc 7495305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 43589162 - 43589210
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  43589162 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 43589210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 32402239 - 32402189
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 218  Q
    |||||||||||||||||||||  |||||||||||||| ||||||| |||||    
T  32402239 gactttcccatggtgggaaagtcttcctcctacccactctaaatggcaccc 32402189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 42993199 - 42993248
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||| ||||    
T  42993199 gacttttccatggtgggatagaattccttctacccaccctaaatgccacc 42993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 33802373 - 33802421
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  33802373 actttcccatggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 38686351 - 38686302
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 218  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  38686351 actttcccatggtggaaaagaattccttctacccaccctaaatgccaccc 38686302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 42638197 - 42638148
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  42638197 gactttctcatggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 33801547 - 33801499
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  33801547 acttttccatggtgggaaagaattccttctacccaccctaaatgccacc 33801499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 38687055 - 38687098
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatg 212  Q
    |||||||||| |||||||||||||||| ||||||||||||||||    
T  38687055 actttcccattgtgggaaagaattccttctacccaccctaaatg 38687098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 32551108 - 32551154
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtca 215  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  32551108 actttcctatgatgggaaagaattccttctacccaccctaaatgtca 32551154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 35432220 - 35432270
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 218  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  35432220 gacttttccatggtgggaaagaattccttctacccaccctaaatgccaccc 35432270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 44406251 - 44406197
Alignment:
Q  163 aaaatgactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  44406251 aaaaagacttttccatggtgggaaagaattcttcctacccaccctaaatgccacc 44406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 47480553 - 47480507
Alignment:
Q  171 tttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||    
T  47480553 tttctcatggtggaaaataattcctcctacccaccctaaatgtcacc 47480507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 7359841 - 7359890
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| ||||    
T  7359841 gactttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 35431373 - 35431337
Alignment:
Q  176 catggtgggaaagaattcctcctacccaccctaaatg 212  Q
    ||||||||||||| |||||||||||||||||||||||    
T  35431373 catggtgggaaagtattcctcctacccaccctaaatg 35431337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 20687513 - 20687463
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccaccctaaatgtcaccc 218  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| |||||    
T  20687513 gactttcctatggtgggaaagtattcctcctacctaccctaaatgccaccc 20687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 19063708 - 19063660
Alignment:
Q  169 actttcccatggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  19063708 actttcccatggttggaaagtattcctcctacccacccaaaatgccacc 19063660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 20689063 - 20689104
Alignment:
Q  176 catggtgggaaagaattcctcctacccaccctaaatgtcacc 217  Q
    |||||| |||||| ||||||||||||||||||||||| ||||    
T  20689063 catggtaggaaagtattcctcctacccaccctaaatgccacc 20689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 10606383 - 10606343
Alignment:
Q  168 gactttcccatggtgggaaagaattcctcctacccacccta 208  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  10606383 gactttcttatggtggaaaagaattcctcctacccacccta 10606343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University