View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_high_27 (Length: 241)
Name: NF19576_high_27
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5054143 - 5053920
Alignment:
| Q |
1 |
catctttaaagtatctctacttggaagagacatcaaacacatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5054143 |
catctttaaagtatctctacttggaagagacatcaaacacatacattttggttacaatgtcaagaccaaacatttgacaaagatcgagggcattaccatg |
5054044 |
T |
|
| Q |
101 |
ggcaattttgaggtatggcctcacgttaacagtttagtttcatttccaagtactccgacatagctagatttcctggtattacttatatttgtcttagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5054043 |
ggcaattttgaggtatggcctcacgtcaacagtttagtttcatttccaagtactccgacatagctaggtttcctggtattacttatatttgtcttagtta |
5053944 |
T |
|
| Q |
201 |
ggcataacaattaaacaattattt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
5053943 |
ggcataacaattaaacaattattt |
5053920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 46446193 - 46446222
Alignment:
| Q |
43 |
acattttggttacaatgtcaagaccaaaca |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
46446193 |
acattttggttacaatgtcaagaccaaaca |
46446222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 39576559 - 39576687
Alignment:
| Q |
39 |
acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt |
138 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||| ||||||| |||| ||||||| | | |
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|
| T |
39576559 |
acatacattttagttacaatgtcaagaccaaacaattgacaaagattgagggcattgcctcgggtgattttgaagtatggcttcacactaacagtctttt |
39576658 |
T |
|
| Q |
139 |
ttcatttccaagtactccgacatagctag |
167 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
39576659 |
ttcatttccaagtactccgacatagctag |
39576687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 3561389 - 3561339
Alignment:
| Q |
44 |
cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcatt |
94 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||| ||||||||| |
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|
| T |
3561389 |
cattttggttacaatgtcaagactagacgattgacaaagatagagggcatt |
3561339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 225560 - 225608
Alignment:
| Q |
44 |
cattttggttacaatgtcaagaccaaacatttgacaaagattgagggca |
92 |
Q |
| |
|
|||||| |||||||||||||||| | ||| |||||||||||||||||| |
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|
| T |
225560 |
cattttagttacaatgtcaagactagacaactgacaaagattgagggca |
225608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 9860829 - 9860956
Alignment:
| Q |
39 |
acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt |
138 |
Q |
| |
|
|||| |||||||||||||||||||| || | ||| ||||||| ||| ||||||||| |||| |||||||||||||| ||||| ||||||||||||| |
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|
| T |
9860829 |
acattcattttggttacaatgtcaaaactagacaattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacagtttagt |
9860928 |
T |
|
| Q |
139 |
ttcatttccaagtactccgacatagcta |
166 |
Q |
| |
|
|||||| ||| ||||||| |||||||| |
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|
| T |
9860929 |
ttcattgccatgtactccagcatagcta |
9860956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 9842188 - 9842315
Alignment:
| Q |
39 |
acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt |
138 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||||||||||| |||| | | ||||| ||||| ||||| | |||| ||||||| |||| |
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|
| T |
9842188 |
acatacattttggttacaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagt |
9842287 |
T |
|
| Q |
139 |
ttcatttccaagtactccgacatagcta |
166 |
Q |
| |
|
|||||| ||| ||||||| |||||||| |
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|
| T |
9842288 |
ttcattgccaggtactcctgcatagcta |
9842315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 9903122 - 9903244
Alignment:
| Q |
44 |
cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcat |
143 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||| ||||||||||| |||| | |||| ||||| | |||||| |||| ||||||| ||||||||| |
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|
| T |
9903122 |
catttttgttacaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtctagtttcat |
9903221 |
T |
|
| Q |
144 |
ttccaagtactccgacatagcta |
166 |
Q |
| |
|
| |||||||||| |||||||| |
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|
| T |
9903222 |
tgtcaagtactccaccatagcta |
9903244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 7257009 - 7257110
Alignment:
| Q |
39 |
acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt |
138 |
Q |
| |
|
||||| |||||||||| ||||| ||||||| || ||||| |||||||||| |||| |||||||||||||| |||||| ||||| ||||||| |||| |
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|
| T |
7257009 |
acatatattttggttataatgtgaagaccaggcaattgactaagattgaggacattggaatgggcaattttgaagtatggtctcacactaacagtctagt |
7257108 |
T |
|
| Q |
139 |
tt |
140 |
Q |
| |
|
|| |
|
|
| T |
7257109 |
tt |
7257110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 112479 - 112355
Alignment:
| Q |
51 |
gttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcatttccaag |
150 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||| | ||||| ||||| ||||||| | ||||| ||| || | | |||||||||| ||||| |
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|
| T |
112479 |
gttacaatgtcaagactagacaactgacaaagattgatgacattatagtgggccattttgaagcatggcttcatacaaatactctagtttcattgccaag |
112380 |
T |
|
| Q |
151 |
tactccgacatagctagatttcctg |
175 |
Q |
| |
|
|||||| |||||||||| ||||||| |
|
|
| T |
112379 |
tactccaacatagctaggtttcctg |
112355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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