View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19576_high_30 (Length: 230)
Name: NF19576_high_30
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 4774362 - 4774555
Alignment:
| Q |
19 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4774362 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
4774461 |
T |
|
| Q |
119 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtnnnnnnnntttatgataataaattaatgcgtgtaagcgtgtgaaatt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4774462 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtaaataaattttatgataataaattaatgcgtgtaagcgtgtgaaatt |
4774555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University