View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_high_4 (Length: 498)
Name: NF19576_high_4
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_high_4 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 133 - 483
Target Start/End: Complemental strand, 2545 - 2195
Alignment:
| Q |
133 |
attgaataaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
232 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2545 |
attgattaaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
2446 |
T |
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| Q |
233 |
ctannnnnnncttcattgttatgaaataataatacacaagaaagtgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaa |
332 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2445 |
ctatttttttcttcattgttatgaaataataatacacaagaaaatgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaa |
2346 |
T |
|
| Q |
333 |
aacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacgg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2345 |
aacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacgg |
2246 |
T |
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| Q |
433 |
tagaaatcatattcaagaagagagttggaagaagaatcagaagaagatgat |
483 |
Q |
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| T |
2245 |
tagaaatcatattcaagaagaaagttggaagaagaatcagaagaagatgat |
2195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 2665 - 2625
Alignment:
| Q |
13 |
aaaatcaacttaacaacatgacttcagtcaaactgagatat |
53 |
Q |
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| T |
2665 |
aaaatcaacttaacaacatgacttcagtcaaactgagatat |
2625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 133 - 483
Target Start/End: Complemental strand, 3451764 - 3451414
Alignment:
| Q |
133 |
attgaataaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
232 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451764 |
attgattaaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
3451665 |
T |
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| Q |
233 |
ctannnnnnncttcattgttatgaaataataatacacaagaaagtgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaa |
332 |
Q |
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| T |
3451664 |
ctatttttttcttcattgttatgaaataataatacacaagaaaatgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaa |
3451565 |
T |
|
| Q |
333 |
aacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacgg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451564 |
aacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacgg |
3451465 |
T |
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| Q |
433 |
tagaaatcatattcaagaagagagttggaagaagaatcagaagaagatgat |
483 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3451464 |
tagaaatcatattcaagaagaaagttggaagaagaatcagaagaagatgat |
3451414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 3451884 - 3451844
Alignment:
| Q |
13 |
aaaatcaacttaacaacatgacttcagtcaaactgagatat |
53 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451884 |
aaaatcaacttaacaacatgacttcagtcaaactgagatat |
3451844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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