View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_high_9 (Length: 396)
Name: NF19576_high_9
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 145 - 379
Target Start/End: Complemental strand, 43928390 - 43928156
Alignment:
| Q |
145 |
tgatagttgttggagcaggcccttctggtctatcagtagcagcaagcttaagaaaccaatccattccttatataatcctcgaaagagaaaattgttttgc |
244 |
Q |
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| T |
43928390 |
tgatagttgttggagcaggcccttctggtctatcagtagcagcaagcttaagaaaccaatccattccttatataatcctcgaaagagaaaattgttttgc |
43928291 |
T |
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| Q |
245 |
ttcactatggaaaaaatattcatacgatcgtcttcatcttcacctcaaaaaacaattttgtgagcttcctcacaaaccatttccaccttcttttccatca |
344 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43928290 |
ttcactatggaaaaaatattcatatgatcgtcttcatcttcacctcaaaaaacaattttgtgagcttcctcacaaaccatttccaccttcttttccatca |
43928191 |
T |
|
| Q |
345 |
tacattcctaaagataagtttttaaaatacttaga |
379 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
43928190 |
tacattcctaaagataagtttttacaatacttaga |
43928156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25599104 - 25599054
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaacga |
51 |
Q |
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| T |
25599104 |
ttattaacctttgattaaataagatcaacgattgagatttggtgtcaacga |
25599054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 43940257 - 43940139
Alignment:
| Q |
190 |
gcttaagaaaccaatccattccttatataatcctcgaaagagaaaattgttttgcttcactatggaaaaaatattcatacgatcgtcttcatcttcacct |
289 |
Q |
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| T |
43940257 |
gcttaacaaaacaatccatacctttcatcattctcgaaagagaaaactgttttgcttctctatggcaaaattacacctatgatcgtgttcatcttcatct |
43940158 |
T |
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| Q |
290 |
caaaaaacaattttgtgag |
308 |
Q |
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| T |
43940157 |
aagaaaacaactttgtgag |
43940139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45162051 - 45162001
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaacga |
51 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||||||||||||| |
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| T |
45162051 |
ttattaacctttgattaaataagatcaacagttgagatttggtgtcaacga |
45162001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29188684 - 29188734
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaacga |
51 |
Q |
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| T |
29188684 |
ttattaacttttgattaaataagatcaacagttgagatttggtgtcaacga |
29188734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43928537 - 43928488
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaacg |
50 |
Q |
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|||||||||||| ||||||||||||||| | || |||||||||||||||| |
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| T |
43928537 |
ttattaacctttgattaaataagatcaatagttgagatttggtgtcaacg |
43928488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24008451 - 24008402
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaacg |
50 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||||||||||| |
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| T |
24008451 |
ttattaacctttgattaaataagatcaacagttgagatttggtgtcaacg |
24008402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19311083 - 19311035
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaac |
49 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
19311083 |
ttattaacctttgattaaataagatcaacagttgagatttggtgtcaac |
19311035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23343862 - 23343812
Alignment:
| Q |
1 |
ttattaacctttcattaaataagatcaacaattaagatttggtgtcaacga |
51 |
Q |
| |
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|||||||||||| ||||||||||||||||| || ||||||| ||||||||| |
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| T |
23343862 |
ttattaacctttgattaaataagatcaacagttgagatttgatgtcaacga |
23343812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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