View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_low_1 (Length: 982)

Name: NF19576_low_1
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_low_1
NF19576_low_1
[»] chr8 (5 HSPs)
chr8 (89-236)||(36645785-36645937)
chr8 (650-829)||(3733907-3734080)
chr8 (879-964)||(3733349-3733434)
chr8 (429-505)||(36645375-36645451)
chr8 (827-861)||(3733599-3733633)
[»] scaffold0576 (3 HSPs)
scaffold0576 (650-829)||(4358-4531)
scaffold0576 (879-964)||(3783-3868)
scaffold0576 (827-861)||(4050-4084)
[»] chr7 (3 HSPs)
chr7 (650-829)||(2752015-2752188)
chr7 (879-964)||(2752661-2752746)
chr7 (827-861)||(2752462-2752496)
[»] chr6 (3 HSPs)
chr6 (650-829)||(15359374-15359547)
chr6 (879-964)||(15358816-15358901)
chr6 (827-861)||(15359066-15359100)
[»] chr1 (3 HSPs)
chr1 (650-829)||(20264622-20264796)
chr1 (879-964)||(20264049-20264134)
chr1 (827-861)||(20264314-20264348)
[»] chr2 (4 HSPs)
chr2 (650-829)||(28658454-28658628)
chr2 (879-964)||(28657881-28657966)
chr2 (599-649)||(29157949-29158000)
chr2 (827-861)||(28658146-28658180)
[»] scaffold0002 (1 HSPs)
scaffold0002 (653-765)||(288864-288978)
[»] chr4 (1 HSPs)
chr4 (653-765)||(18198819-18198933)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 36645937 - 36645785
Alignment:
Q  89 tcacaagctagtattacccagctcggagaacataccagcatgccagacctttataaacacacacttgttccatattctagccaatgtggaacttaatgga 188  Q
    ||||||||| || |||| ||||||||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  36645937 tcacaagctggtgttacgcagctcggcaaacatactagcatgccagacctttataaacacatacttgttccatattctagccaatgtgggacttaatgga 36645838  T
Q  189 tcaaagatgg-----tgtagtattaagttggaatatagtttcttaaatggttt 236  Q
    |  |||||||     || ||| ||||||||||| || ||||||||||||||||    
T  36645837 ttcaagatggagcattgaagtgttaagttggaacatggtttcttaaatggttt 36645785  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 650 - 829
Target Start/End: Complemental strand, 3734080 - 3733907
Alignment:
Q  650 aagagagtgtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 749  Q
    |||||||| |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| ||||||||    
T  3734080 aagagagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaa 3733990  T
Q  750 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 829  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  3733989 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 3733907  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 964
Target Start/End: Complemental strand, 3733434 - 3733349
Alignment:
Q  879 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaac 964  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||    
T  3733434 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaac 3733349  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 36645451 - 36645375
Alignment:
Q  429 atatacctggtttagcttggagtaacatcaggcaacattataacttgctactgctgcttccttgggttctggttttg 505  Q
    |||||||||||||||||| |||||||| || ||||| ||||| ||||| ||||||||||| |  |||||||| ||||    
T  36645451 atatacctggtttagcttagagtaacaacaagcaacgttatagcttgcgactgctgcttcatcaggttctggctttg 36645375  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 861
Target Start/End: Complemental strand, 3733633 - 3733599
Alignment:
Q  827 gaaaaagaaaagaataacattctaacctctccaat 861  Q
    |||||||||||||||||||||||||||||||||||    
T  3733633 gaaaaagaaaagaataacattctaacctctccaat 3733599  T

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Target: scaffold0576 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 650 - 829
Target Start/End: Complemental strand, 4531 - 4358
Alignment:
Q  650 aagagagtgtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 749  Q
    |||| ||| |||| ||||||||||||||||||||||||||  ||||||| |||||||||||  |||       ||  |||| ||||||||| ||||||||    
T  4531 aagacagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaatagtgtc--atc-------tctgaaacgagacaatgggtatttcaa 4441  T
Q  750 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 829  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  4440 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 4358  T

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Target: scaffold0576; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 964
Target Start/End: Complemental strand, 3868 - 3783
Alignment:
Q  879 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaac 964  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||    
T  3868 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaac 3783  T

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Target: scaffold0576; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 861
Target Start/End: Complemental strand, 4084 - 4050
Alignment:
Q  827 gaaaaagaaaagaataacattctaacctctccaat 861  Q
    |||||||||||||||||||||||||||||||||||    
T  4084 gaaaaagaaaagaataacattctaacctctccaat 4050  T

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Target: chr7 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 650 - 829
Target Start/End: Original strand, 2752015 - 2752188
Alignment:
Q  650 aagagagtgtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 749  Q
    |||||||| |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| ||||||||    
T  2752015 aagagagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaa 2752105  T
Q  750 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 829  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  2752106 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 2752188  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 964
Target Start/End: Original strand, 2752661 - 2752746
Alignment:
Q  879 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaac 964  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||    
T  2752661 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaac 2752746  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 861
Target Start/End: Original strand, 2752462 - 2752496
Alignment:
Q  827 gaaaaagaaaagaataacattctaacctctccaat 861  Q
    |||||||||||||||||||||||||||||||||||    
T  2752462 gaaaaagaaaagaataacattctaacctctccaat 2752496  T

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Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 650 - 829
Target Start/End: Complemental strand, 15359547 - 15359374
Alignment:
Q  650 aagagagtgtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 749  Q
    |||||||| |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| ||||||||    
T  15359547 aagagagtatgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaa 15359457  T
Q  750 ggagttaattatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 829  Q
    ||||||||||||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  15359456 ggagttaattatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 15359374  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 964
Target Start/End: Complemental strand, 15358901 - 15358816
Alignment:
Q  879 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaac 964  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||    
T  15358901 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaac 15358816  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 861
Target Start/End: Complemental strand, 15359100 - 15359066
Alignment:
Q  827 gaaaaagaaaagaataacattctaacctctccaat 861  Q
    |||||||||||||||||||||||||||||||||||    
T  15359100 gaaaaagaaaagaataacattctaacctctccaat 15359066  T

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Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 650 - 829
Target Start/End: Complemental strand, 20264796 - 20264622
Alignment:
Q  650 aagagagtgtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 749  Q
    |||||||| |||| |||||||||||||||||||||||||   ||||||| ||||||||||| | ||| |         ||| ||||||||| ||||||||    
T  20264796 aagagagtatgaagcttactttgaagatctctgcaacaatgattacaactgaaatagtgtcatctccga---------aacgagacaatgggtatttcaa 20264706  T
Q  750 ggagttaattatag-aaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 829  Q
    |||||||||||||| ||||  ||||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  20264705 ggagttaattatagaaaaaaatgagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 20264622  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 964
Target Start/End: Complemental strand, 20264134 - 20264049
Alignment:
Q  879 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaac 964  Q
    |||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||| || |||||||| | ||| |||||||||    
T  20264134 tattaataaaaacagaactcgataatagatttagctcccttacaaagattaagaacccacacaaaggttataagaacagtcccaac 20264049  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 861
Target Start/End: Complemental strand, 20264348 - 20264314
Alignment:
Q  827 gaaaaagaaaagaataacattctaacctctccaat 861  Q
    |||||||||||||||||||||||||||||||||||    
T  20264348 gaaaaagaaaagaataacattctaacctctccaat 20264314  T

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Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 650 - 829
Target Start/End: Complemental strand, 28658628 - 28658454
Alignment:
Q  650 aagagagtgtgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaa 749  Q
    |||||||| |||| |||||||||||||||||||||||||   ||||||| |||||||||||  |||       ||  |||| ||||||||  ||||||||    
T  28658628 aagagagtatgaagcttactttgaagatctctgcaacaatgattacaactgaaatagtgtc--atc-------tctgaaacgagacaatgagtatttcaa 28658538  T
Q  750 ggagttaattatag-aaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 829  Q
    |||||||||||||| ||||  ||||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  28658537 ggagttaattatagaaaaaaatgagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 28658454  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 879 - 964
Target Start/End: Complemental strand, 28657966 - 28657881
Alignment:
Q  879 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaac 964  Q
    |||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||| || |||||||| | ||| |||||||||    
T  28657966 tattaataaaaacagaactcgataatagatttagctcccttacaaagattaagaacccacacaaaggttataagaacagtcccaac 28657881  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 599 - 649
Target Start/End: Complemental strand, 29158000 - 29157949
Alignment:
Q  599 aataagtacaagatagttcaa-ttttgacttggattacaacataaaactttg 649  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  29158000 aataagtacaagatagttcaattttttacttggattacagcataaaactttg 29157949  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 861
Target Start/End: Complemental strand, 28658180 - 28658146
Alignment:
Q  827 gaaaaagaaaagaataacattctaacctctccaat 861  Q
    |||||||||||||||||||||||||||||||||||    
T  28658180 gaaaaagaaaagaataacattctaacctctccaat 28658146  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 653 - 765
Target Start/End: Original strand, 288864 - 288978
Alignment:
Q  653 agagtgtgaaacttacttt--gaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaag 750  Q
    ||||| |||||||||||||  |||||||| || ||| | | |||| |||||||||||||| | ||||||| |||  |||  ||||||||| |||||||||    
T  288864 agagtatgaaacttactttttgaagatctttgtaactaaaattactacagaaatagtgtcatctccaagtcatctgaaatgagacaatgggtatttcaag 288963  T
Q  751 gagttaattatagaa 765  Q
    || ||||||||||||    
T  288964 gacttaattatagaa 288978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 653 - 765
Target Start/End: Complemental strand, 18198933 - 18198819
Alignment:
Q  653 agagtgtgaaacttacttt--gaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaag 750  Q
    ||||| |||||||||||||  |||||||| || ||| | | |||| |||||||||||||| | ||||||| |||  |||  ||||||||| |||||||||    
T  18198933 agagtatgaaacttactttttgaagatctttgtaactaaaattactacagaaatagtgtcatctccaagtcatctgaaatgagacaatgggtatttcaag 18198834  T
Q  751 gagttaattatagaa 765  Q
    || ||||||||||||    
T  18198833 gacttaattatagaa 18198819  T

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