View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_10 (Length: 356)
Name: NF19576_low_10
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_10 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 15884903 - 15885239
Alignment:
| Q |
10 |
cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
109 |
Q |
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|||| |||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
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| Q |
110 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
209 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga |
15885102 |
T |
|
| Q |
210 |
agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg |
309 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||| |
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| T |
15885103 |
agagttcgcgtctttggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttg |
15885202 |
T |
|
| Q |
310 |
aggcctaaacttgagaggttgcatagacgaattgatc |
346 |
Q |
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| T |
15885203 |
aggcctaaacttgagaggttgcatagacgtattgatc |
15885239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 12611145 - 12610802
Alignment:
| Q |
10 |
cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
109 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||||| ||||| || | |||||||||||||||| ||||| ||||||| | |||| |||| || |
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| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
|
| Q |
110 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
209 |
Q |
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| | ||||| || || |||| | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| | ||| |
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| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
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| Q |
210 |
agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg |
309 |
Q |
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|||||| | | | || | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| |||||| |
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| T |
12610945 |
agagtttggatctattggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttg |
12610846 |
T |
|
| Q |
310 |
aggcctaaacttgagaggttgcatagacgaattgatcatatact |
353 |
Q |
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||||||||||| |||||||||||||| | ||||||||| ||||| |
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| T |
12610845 |
aggcctaaactggagaggttgcataggcaaattgatcaaatact |
12610802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 12638145 - 12637804
Alignment:
| Q |
10 |
cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
109 |
Q |
| |
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|||| |||||||||||| || ||| | | ||||||||||| ||||||||| ||| ||||||||||||| | | ||||||||||||||||| |||| || |
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| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
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| Q |
110 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
209 |
Q |
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| | ||||| ||| |||||||| ||||| || |||||| |||||| | |||| | | | |||||||||||||||||||||||||| |||||| |
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| T |
12638045 |
cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga |
12637946 |
T |
|
| Q |
210 |
agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg |
309 |
Q |
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| || ||| | ||||| || ||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
12637945 |
acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttc |
12637846 |
T |
|
| Q |
310 |
aggcctaaacttgagaggttgcatagacgaattgatcatata |
351 |
Q |
| |
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||| ||||| ||||| |||||||||| |||||||| |||| |
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| T |
12637845 |
aggtctaaaattgaggtattgcatagacaaattgatcttata |
12637804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 63278 - 62935
Alignment:
| Q |
10 |
cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt |
109 |
Q |
| |
|
|||| |||||||||||| |||||||| | |||| ||| | | ||||||| ||||||||||||||||| ||| |||||||||||||||| |||| || |
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| T |
63278 |
cgaaaaatatgcacaattgagcttttgactcaaagtcgtatcaattcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatt |
63179 |
T |
|
| Q |
110 |
ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga |
209 |
Q |
| |
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| ||||| | | ||||| |||||||||||||| || || ||| | || ||||| |||| | |||||||||||| |||||||||||| |||||| |
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| T |
63178 |
tgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaaga |
63079 |
T |
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| Q |
210 |
agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg |
309 |
Q |
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| |||| |||| ||||| || || |||||||| |||||||||||| || |||| | ||||||||||| ||||||||||||||| | | | | |
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| T |
63078 |
acagtttgcgtcattgggaaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaa |
62979 |
T |
|
| Q |
310 |
aggcctaaacttgagaggttgcatagacgaattgatcatatact |
353 |
Q |
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|||||||||||| ||||||||||||||| | ||||||| ||||| |
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| T |
62978 |
aggcctaaacttaagaggttgcatagacaacttgatcagatact |
62935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 23146811 - 23146706
Alignment:
| Q |
242 |
ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat |
341 |
Q |
| |
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||||||| ||||||||| | || || ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |
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| T |
23146811 |
ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac |
23146712 |
T |
|
| Q |
342 |
tgatca |
347 |
Q |
| |
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|||||| |
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| T |
23146711 |
tgatca |
23146706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 23039909 - 23039831
Alignment:
| Q |
269 |
tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatca |
347 |
Q |
| |
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||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| |
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|
| T |
23039909 |
tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatca |
23039831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
| Q |
241 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
325 |
Q |
| |
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||||||||||||||| || | || || |||||||||| ||||||||||||||| |||| ||||| | |||||||| ||||||| |
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| T |
23033743 |
attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga |
23033659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 5626 - 5710
Alignment:
| Q |
241 |
attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga |
325 |
Q |
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|||||||||||||||||| | || || ||||||| || ||||||||||| |||| ||| |||||||||||||||| ||||||| |
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| T |
5626 |
attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgaga |
5710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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